PDB entry 3a4s

View 3a4s on RCSB PDB site
Description: The crystal structure of the SLD2:Ubc9 complex
Class: ligase/trnascription
Keywords: ubiquitin fold, SUMO, Coiled coil, Cytoplasm, Methylation, Nucleus, ATP-binding, Cell cycle, Cell division, Chromosome partition, Host-virus interaction, Isopeptide bond, Ligase, Mitosis, Nucleotide-binding, Ubl conjugation, Ubl conjugation pathway, LIGASE-TRNASCRIPTION COMPLEX
Deposited on 2009-07-14, released 2010-02-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2010-03-23, with a file datestamp of 2010-03-19.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.227
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: SUMO-conjugating enzyme UBC9
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC9
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3a4sa_
  • Chain 'B':
    Compound: SUMO-conjugating enzyme UBC9
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC9
    Database cross-references and differences (RAF-indexed):
    • Uniprot P63279 (5-162)
      • expression tag (4)
    Domains in SCOPe 2.08: d3a4sb1, d3a4sb2
  • Chain 'C':
    Compound: NFATC2-interacting protein
    Species: Mus musculus [TaxId:10090]
    Gene: Nip45
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3a4sc_
  • Chain 'D':
    Compound: NFATC2-interacting protein
    Species: Mus musculus [TaxId:10090]
    Gene: Nip45
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3a4sd_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3a4sA (A:)
gplgsmsgialsrlaqerkawrkdhpfgfvavptknpdgtmnlmnwecaipgkkgtpweg
glfklrmlfkddypssppkckfepplfhpnvypsgtvclsileedkdwrpaitikqillg
iqellnepniqdpaqaeaytiycqnrveyekrvraqakkfaps

    Sequence, based on observed residues (ATOM records): (download) 
    >3a4sA (A:)
gialsrlaqerkawrkdhpfgfvavptkpdgtmnlmnwecaipgkkgtpwegglfklrml
fkddypssppkckfepplfhpnvypsgtvclsileedkdwrpaitikqillgiqellnep
niqdpaqaeaytiycqnrveyekrvraqakkfaps

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3a4sB (B:)
gplgsmsgialsrlaqerkawrkdhpfgfvavptknpdgtmnlmnwecaipgkkgtpweg
glfklrmlfkddypssppkckfepplfhpnvypsgtvclsileedkdwrpaitikqillg
iqellnepniqdpaqaeaytiycqnrveyekrvraqakkfaps

    Sequence, based on observed residues (ATOM records): (download) 
    >3a4sB (B:)
smsgialsrlaqerkawrkdhpfgfvavptktmnlmnwecaipgkkgtpwegglfklrml
fkddypssppkckfepplfhpnvypsgtvclsileedkdwrpaitikqillgiqellnep
niqdpaqaeaytiycqnrveyekrvraqakkfaps

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3a4sC (C:)
gplgsqelrlrvqgkekhqmleislspdsplkvlmshyeeamglsghklsfffdgtklsg
kelpadlglesgdlievwg

    Sequence, based on observed residues (ATOM records): (download) 
    >3a4sC (C:)
qelrlrvqgkekhqmleislspdsplkvlmshyeeamglsghklsfffdgtklsgkelpa
dlglesgdlievwg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3a4sD (D:)
gplgsqelrlrvqgkekhqmleislspdsplkvlmshyeeamglsghklsfffdgtklsg
kelpadlglesgdlievwg

    Sequence, based on observed residues (ATOM records): (download) 
    >3a4sD (D:)
elrlrvqgkekhqmleislspsplkvlmshyeealsfffdgtklsgkelpaglesgdlie
vw