PDB entry 3a4k

View 3a4k on RCSB PDB site
Description: crystal structural analysis of hindiii restriction endonuclease in complex with cognate dna and divalent cations at 2.17 angstrom resolution
Deposited on 2009-07-09, released 2009-10-20
The last revision was dated 2017-10-11, with a file datestamp of 2017-10-06.
Experiment type: XRAY
Resolution: 2.17 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Type-2 restriction enzyme HindIII
    Species: Haemophilus influenzae [TaxId:71421]
    Gene: hindIIIR
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Type-2 restriction enzyme HindIII
    Species: Haemophilus influenzae [TaxId:71421]
    Gene: hindIIIR
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Type-2 restriction enzyme HindIII
    Species: Haemophilus influenzae [TaxId:71421]
    Gene: hindIIIR
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Type-2 restriction enzyme HindIII
    Species: Haemophilus influenzae [TaxId:71421]
    Gene: hindIIIR
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA (5'-d(*gp*cp*cp*a)-3')
  • Chain 'F':
    Compound: DNA (5'-d(p*ap*gp*cp*tp*tp*gp*gp*c)-3')
  • Chain 'G':
    Compound: DNA (5'-d(*gp*cp*cp*a)-3')
  • Chain 'H':
    Compound: DNA (5'-d(p*ap*gp*cp*tp*tp*gp*gp*c)-3')
  • Chain 'I':
    Compound: DNA (5'-d(*gp*cp*cp*a)-3')
  • Chain 'J':
    Compound: DNA (5'-d(p*ap*gp*cp*tp*tp*gp*gp*c)-3')
  • Chain 'K':
    Compound: DNA (5'-d(*gp*cp*cp*a)-3')
  • Chain 'L':
    Compound: DNA (5'-d(p*ap*gp*cp*tp*tp*gp*gp*c)-3')
  • Chain 'M':
    Compound: DNA (5'-d(*gp*cp*cp*ap*ap*gp*cp*tp*tp*gp*gp*c)-3')
    Species: synthetic, synthetic
  • Chain 'N':
    Compound: DNA (5'-d(*gp*cp*cp*ap*ap*gp*cp*tp*tp*gp*gp*c)-3')
    Species: synthetic, synthetic
  • Heterogens: MG, MN, GOL, ACT, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3a4kA (A:)
hmkksalekllslienltnqefkqatnslisfiyklnrnevielvrsigilpeaikpsst
qeklfskagdivlakafqllnlnskpleqrgnagdvialskefnyglvadaksfrlsrta
knqkdfkvkalsewredkdyavltapffqypttksqifkqsldenvllfswehlaillql
dleetnifsfeqlwnfpkkqskktsvsdaennfmrdfnkyfmdlfkidkdtlnqllqkei
nfieersliekeywkkqiniiknftreeaieallkdinmsskietidsfikgiksndrly
l

    Sequence, based on observed residues (ATOM records):
    >3a4kA (A:)
ksalekllslienltnqefkqatnslisfiyklnrnevielvrsigilpeaikpsstqek
lfskagdivlakafqllnlnskpleqgnagdvialskefnyglvadaksfrlsrtaknqk
dfkvkalsewredkdyavltapffqypttksqifkqsldenvllfswehlaillqldlee
tnifsfeqlwnfpkkqskktsvsdaennfmrdfnkyfmdlfkidkdtlnqllqkeinfie
ersliekeywkkqiniiknftreeaieallkdinmsskietidsfikgiksndrlyl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3a4kB (B:)
hmkksalekllslienltnqefkqatnslisfiyklnrnevielvrsigilpeaikpsst
qeklfskagdivlakafqllnlnskpleqrgnagdvialskefnyglvadaksfrlsrta
knqkdfkvkalsewredkdyavltapffqypttksqifkqsldenvllfswehlaillql
dleetnifsfeqlwnfpkkqskktsvsdaennfmrdfnkyfmdlfkidkdtlnqllqkei
nfieersliekeywkkqiniiknftreeaieallkdinmsskietidsfikgiksndrly
l

    Sequence, based on observed residues (ATOM records):
    >3a4kB (B:)
ksalekllslienltnqefkqatnslisfiyklnrnevielvrsigilpeaikpsstqek
lfskagdivlakafqllnlnskpleqgnagdvialskefnyglvadaksfrlsrtaknqk
dfkvkalsewredkdyavltapffqypttksqifkqsldenvllfswehlaillqldlee
tnifsfeqlwnfpkkqskktsvsdaennfmrdfnkyfmdlfkidkdtlnqllqkeinfie
ersliekeywkkqiniiknftreeaieallkdinmsskietidsfikgiksndrlyl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3a4kC (C:)
hmkksalekllslienltnqefkqatnslisfiyklnrnevielvrsigilpeaikpsst
qeklfskagdivlakafqllnlnskpleqrgnagdvialskefnyglvadaksfrlsrta
knqkdfkvkalsewredkdyavltapffqypttksqifkqsldenvllfswehlaillql
dleetnifsfeqlwnfpkkqskktsvsdaennfmrdfnkyfmdlfkidkdtlnqllqkei
nfieersliekeywkkqiniiknftreeaieallkdinmsskietidsfikgiksndrly
l

    Sequence, based on observed residues (ATOM records):
    >3a4kC (C:)
ksalekllslienltnqefkqatnslisfiyklnrnevielvrsigilpeaikpsstqek
lfskagdivlakafqllnlnskpleqgnagdvialskefnyglvadaksfrlsrtaknqk
dfkvkalsewredkdyavltapffqypttksqifkqsldenvllfswehlaillqldlee
tnifsfeqlwnfpkkqskktsvsdaennfmrdfnkyfmdlfkidkdtlnqllqkeinfie
ersliekeywkkqiniiknftreeaieallkdinmsskietidsfikgiksndrlyl

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3a4kD (D:)
hmkksalekllslienltnqefkqatnslisfiyklnrnevielvrsigilpeaikpsst
qeklfskagdivlakafqllnlnskpleqrgnagdvialskefnyglvadaksfrlsrta
knqkdfkvkalsewredkdyavltapffqypttksqifkqsldenvllfswehlaillql
dleetnifsfeqlwnfpkkqskktsvsdaennfmrdfnkyfmdlfkidkdtlnqllqkei
nfieersliekeywkkqiniiknftreeaieallkdinmsskietidsfikgiksndrly
l

    Sequence, based on observed residues (ATOM records):
    >3a4kD (D:)
ksalekllslienltnqefkqatnslisfiyklnrnevielvrsigilpeaikpsstqek
lfskagdivlakafqllnlnskpleqrgnagdvialskefnyglvadaksfrlsrtaknq
kdfkvkalsewredkdyavltapffqypttksqifkqsldenvllfswehlaillqldle
etnifsfeqlwnfpkkqskktsvsdaennfmrdfnkyfmdlfkidkdtlnqllqkeinfi
eersliekeywkkqiniiknftreeaieallkdinmsskietidsfikgiksndrlyl

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    No sequence available.