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PDB entry 3V7A

View 3V7A on RCSB PDB site
Description: Structural basis for broad detection of genogroup II noroviruses by a monoclonal antibody that binds to a site occluded in the viral particle
Deposited on 2011-12-20, released 2012-02-08
The last revision was dated 2012-03-28, with a file datestamp of 2012-03-23.
Experiment type: XRAY
Resolution: 3.3 Å
R-factor: 0.23
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid
    Species: Human calicivirus [TaxId:150080]
    Database cross-references and differences (RAF-indexed):
    • PDB 3V7A (0-314)
  • Chain 'B':
    Compound: Capsid
    Species: Human calicivirus [TaxId:150080]
    Database cross-references and differences (RAF-indexed):
    • PDB 3V7A (Start-314)
  • Chain 'E':
    Compound: 5B18 heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3V7A (0-End)
  • Chain 'F':
    Compound: 5B18 heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3V7A (0-End)
  • Chain 'G':
    Compound: 5B18 kappa chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3V7A (0-214)
  • Chain 'H':
    Compound: 5B18 kappa chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3V7A (0-214)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.06, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >3v7aA (A:)
    skpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgi
    cafrgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrnt
    ntvpgegnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvd
    anshfdqwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpq
    ewvqhlyqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyf
    rfdswvnqfytlapm
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3v7aB (B:)
    skpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgi
    cafrgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrnt
    ntvpgegnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvd
    anshfdqwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpq
    ewvqhlyqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyf
    rfdswvnqfytlapm
    

    Sequence, based on observed residues (ATOM records):
    >3v7aB (B:)
    kpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgic
    afrgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrntn
    tnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvdanshfd
    qwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpqewvqhl
    yqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyfrfdswv
    nqfytlapm
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3v7aE (E:)
    qvqlqqsgaelvrpgtsvkvsckasgyaftnyliewvkqrpgqglewigvinprsgdtns
    nekfkgkailtadkssstaymqlssltsddsavyfcarsgttayfamdywgqgtsvtvss
    akttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsd
    lytlsssvtvpsstwpsetvtcnvahpasstkvdkkivprdct
    

    Sequence, based on observed residues (ATOM records):
    >3v7aE (E:)
    qvqlqqsgaelvrpgtsvkvsckasgyaftnyliewvkqrpgqglewigvinprsgdtns
    nekfkgkailtadkssstaymqlssltsddsavyfcarsgttayfamdywgqgtsvtvss
    akttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsd
    lytlsssvtvpsstwpsetvtcnvahpasstkvdkkivpr
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3v7aF (F:)
    qvqlqqsgaelvrpgtsvkvsckasgyaftnyliewvkqrpgqglewigvinprsgdtns
    nekfkgkailtadkssstaymqlssltsddsavyfcarsgttayfamdywgqgtsvtvss
    akttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsd
    lytlsssvtvpsstwpsetvtcnvahpasstkvdkkivprdct
    

    Sequence, based on observed residues (ATOM records):
    >3v7aF (F:)
    qvqlqqsgaelvrpgtsvkvsckasgyaftnyliewvkqrpgqglewigvinprsgdtns
    nekfkgkailtadkssstaymqlssltsddsavyfcarsgttayfamdywgqgtsvtvss
    akttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsd
    lytlsssvtvpsstwpsetvtcnvahpasstkvdkkivpr
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >3v7aG (G:)
    diqmtqspaslsasvgetvtitcraseniysylawyqqkqgkspqllvynvktlaegvps
    rfsgsgsgtqfslkinslqpedfgsyycqhhygsppwtfgggtkleikradaaptvsifp
    psseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstl
    tltkdeyerhnsytceathktstspivksfnrnec
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >3v7aH (H:)
    diqmtqspaslsasvgetvtitcraseniysylawyqqkqgkspqllvynvktlaegvps
    rfsgsgsgtqfslkinslqpedfgsyycqhhygsppwtfgggtkleikradaaptvsifp
    psseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstl
    tltkdeyerhnsytceathktstspivksfnrnec