PDB entry 2zvn

View 2zvn on RCSB PDB site
Description: NEMO CoZi domain incomplex with diubiquitin in P212121 space group
Class: SIGNALING PROTEIN/Transcription
Keywords: NF-kB signaling, Ubiquitin binding, Coiled coil, Cytoplasm, Metal-binding, Nucleus, Phosphoprotein, Transcription, Transcription regulation, Ubl conjugation, Zinc, Zinc-finger, SIGNALING PROTEIN-Transcription COMPLEX
Deposited on 2008-11-12, released 2009-03-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-11, with a file datestamp of 2017-10-06.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: UBC protein
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zvna1, d2zvna2
  • Chain 'B':
    Compound: NF-kappa-B essential modulator
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O88522 (2-End)
      • expression tag (1)
  • Chain 'C':
    Compound: UBC protein
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q96C32 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.08: d2zvnc1, d2zvnc2, d2zvnc3
  • Chain 'D':
    Compound: NF-kappa-B essential modulator
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: UBC protein
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zvne1, d2zvne2
  • Chain 'F':
    Compound: NF-kappa-B essential modulator
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O88522 (2-86)
      • expression tag (1)
  • Chain 'G':
    Compound: UBC protein
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zvng1, d2zvng2
  • Chain 'H':
    Compound: NF-kappa-B essential modulator
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O88522 (2-86)
      • expression tag (1)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2zvnA (A:)
gsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrggmqifvktltgktitlevepsdtienvkakiqdkegippdqqr
lifagkqledgrtlsdyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >2zvnA (A:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrggmqifvktltgktitlevepsdtienvkakiqdkegippdqqrli
fagkqledgrtlsdyniqkestlhlvlr

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2zvnC (C:)
gsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrggmqifvktltgktitlevepsdtienvkakiqdkegippdqqr
lifagkqledgrtlsdyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >2zvnC (C:)
smqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
niqkestlhlvlrlrggmqifvktltgktitlevepsdtienvkakiqdkegippdqqrl
ifagkqledgrtlsdyniqkestlhlvlr

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2zvnE (E:)
gsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrggmqifvktltgktitlevepsdtienvkakiqdkegippdqqr
lifagkqledgrtlsdyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >2zvnE (E:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrggmqifvktltgktitlevepsdtienvkakiqdkegippdqqrli
fagkqledgrtlsdyniqkestlhlv

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2zvnG (G:)
gsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrggmqifvktltgktitlevepsdtienvkakiqdkegippdqqr
lifagkqledgrtlsdyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >2zvnG (G:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrggmqifvktltgktitlevepsdtienvkakiqdkegippdqqrli
fagkqledgrtlsdyniqkestlhlv

  • Chain 'H':
    No sequence available.