PDB entry 2zvf

View 2zvf on RCSB PDB site
Description: Crystal structure of Archaeoglobus fulgidus alanyl-tRNA synthetase C-terminal dimerization domain
Deposited on 2008-11-06, released 2009-06-30
The last revision was dated 2009-06-30, with a file datestamp of 2009-06-26.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: 0.205
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alanyl-tRNA synthetase
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF_2255, alaS
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Alanyl-tRNA synthetase
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF_2255, alaS
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Alanyl-tRNA synthetase
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF_2255, alaS
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Alanyl-tRNA synthetase
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF_2255, alaS
    Database cross-references and differences (RAF-indexed):
    • Uniprot O28029 (1-End)
      • initiating methionine (0)
  • Chain 'E':
    Compound: Alanyl-tRNA synthetase
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF_2255, alaS
    Database cross-references and differences (RAF-indexed):
    • Uniprot O28029 (1-End)
      • initiating methionine (0)
  • Chain 'F':
    Compound: Alanyl-tRNA synthetase
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF_2255, alaS
    Database cross-references and differences (RAF-indexed):
    • Uniprot O28029 (1-End)
      • initiating methionine (0)
  • Chain 'G':
    Compound: Alanyl-tRNA synthetase
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF_2255, alaS
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Alanyl-tRNA synthetase
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF_2255, alaS
    Database cross-references and differences (RAF-indexed):
    • Uniprot O28029 (1-170)
      • initiating methionine (0)
  • Heterogens: SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2zvfA (A:)
mgeaaieaveemerllreassilrvepaklpktverffeewkdqrkeierlksviadlwa
dilmeraeefdsmkvvaevvdadmqalqklaerlaekgavgclmakgegkvfvvtfsgqk
ydarellreigrvakgsgggrkdvaqgavqqlldreemldvifrflseheg

    Sequence, based on observed residues (ATOM records):
    >2zvfA (A:)
geaaieaveemerllreassilrvepaklpktverffeewkdqrkeierlksviadlwad
ilmeraeefdsmkvvaevvdadmqalqklaerlaekgavgclmakgegkvfvvtfsgqky
darellreigrvakgsgggrkdvaqgavqqlldreemldvifrflseheg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2zvfB (B:)
mgeaaieaveemerllreassilrvepaklpktverffeewkdqrkeierlksviadlwa
dilmeraeefdsmkvvaevvdadmqalqklaerlaekgavgclmakgegkvfvvtfsgqk
ydarellreigrvakgsgggrkdvaqgavqqlldreemldvifrflseheg

    Sequence, based on observed residues (ATOM records):
    >2zvfB (B:)
geaaieaveemerllreassilrvepaklpktverffeewkdqrkeierlksviadlwad
ilmeraeefdsmkvvaevvdadmqalqklaerlaekgavgclmakgegkvfvvtfsgqky
darellreigrvakgsgggrkdvaqgavqqlldreemldvifrflseheg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2zvfC (C:)
mgeaaieaveemerllreassilrvepaklpktverffeewkdqrkeierlksviadlwa
dilmeraeefdsmkvvaevvdadmqalqklaerlaekgavgclmakgegkvfvvtfsgqk
ydarellreigrvakgsgggrkdvaqgavqqlldreemldvifrflseheg

    Sequence, based on observed residues (ATOM records):
    >2zvfC (C:)
aaieaveemerllreassilrvepaklpktverffeewkdqrkeierlksviadlwadil
meraeefdsmkvvaevvdadmqalqklaerlaekgavgclmakgegkvfvvtfsgqkyda
rellreigrvakgsgggrkdvaqgavqqlldreemldvifrflseh

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2zvfD (D:)
mgeaaieaveemerllreassilrvepaklpktverffeewkdqrkeierlksviadlwa
dilmeraeefdsmkvvaevvdadmqalqklaerlaekgavgclmakgegkvfvvtfsgqk
ydarellreigrvakgsgggrkdvaqgavqqlldreemldvifrflseheg

    Sequence, based on observed residues (ATOM records):
    >2zvfD (D:)
mgeaaieaveemerllreassilrvepaklpktverffeewkdqrkeierlksviadlwa
dilmeraeefdsmkvvaevvdadmqalqklaerlaekgavgclmakgegkvfvvtfsgqk
ydarellreigrvakgsgggrkdvaqgavqqlldreemldvifrflsehe

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2zvfE (E:)
mgeaaieaveemerllreassilrvepaklpktverffeewkdqrkeierlksviadlwa
dilmeraeefdsmkvvaevvdadmqalqklaerlaekgavgclmakgegkvfvvtfsgqk
ydarellreigrvakgsgggrkdvaqgavqqlldreemldvifrflseheg

    Sequence, based on observed residues (ATOM records):
    >2zvfE (E:)
mgeaaieaveemerllreassilrvepaklpktverffeewkdqrkeierlksviadlwa
dilmeraeefdsmkvvaevvdadmqalqklaerlaekgavgclmakgegkvfvvtfsgqk
ydarellreigrvakgsgggrkdvaqgavqqlldreemldvifrflsehe

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2zvfF (F:)
mgeaaieaveemerllreassilrvepaklpktverffeewkdqrkeierlksviadlwa
dilmeraeefdsmkvvaevvdadmqalqklaerlaekgavgclmakgegkvfvvtfsgqk
ydarellreigrvakgsgggrkdvaqgavqqlldreemldvifrflseheg

    Sequence, based on observed residues (ATOM records):
    >2zvfF (F:)
mgeaaieaveemerllreassilrvepaklpktverffeewkdqrkeierlksviadlwa
dilmeraeefdsmkvvaevvdadmqalqklaerlaekgavgclmakgegkvfvvtfsgqk
ydarellreigrvakgsgggrkdvaqgavqqlldreemldvifrflse

  • Chain 'G':
    Sequence, based on SEQRES records:
    >2zvfG (G:)
mgeaaieaveemerllreassilrvepaklpktverffeewkdqrkeierlksviadlwa
dilmeraeefdsmkvvaevvdadmqalqklaerlaekgavgclmakgegkvfvvtfsgqk
ydarellreigrvakgsgggrkdvaqgavqqlldreemldvifrflseheg

    Sequence, based on observed residues (ATOM records):
    >2zvfG (G:)
geaaieaveemerllreassilrvepaklpktverffeewkdqrkeierlksviadlwad
ilmeraeefdsmkvvaevvdadmqalqklaerlaekgavgclmakgegkvfvvtfsgqky
darellreigrvakgsgggrkdvaqgavqqlldreemldvifrflseheg

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >2zvfH (H:)
mgeaaieaveemerllreassilrvepaklpktverffeewkdqrkeierlksviadlwa
dilmeraeefdsmkvvaevvdadmqalqklaerlaekgavgclmakgegkvfvvtfsgqk
ydarellreigrvakgsgggrkdvaqgavqqlldreemldvifrflseheg