PDB entry 2zv3

View 2zv3 on RCSB PDB site
Description: Crystal structure of project MJ0051 from Methanocaldococcus jannaschii DSM 2661
Class: hydrolase
Keywords: Cytoplasm, Hydrolase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI
Deposited on 2008-10-31, released 2009-05-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-05-05, with a file datestamp of 2009-05-01.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.218
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peptidyl-tRNA hydrolase
    Species: Methanocaldococcus jannaschii [TaxId:243232]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zv3a_
  • Chain 'B':
    Compound: Peptidyl-tRNA hydrolase
    Species: Methanocaldococcus jannaschii [TaxId:243232]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zv3b_
  • Chain 'C':
    Compound: Peptidyl-tRNA hydrolase
    Species: Methanocaldococcus jannaschii [TaxId:243232]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zv3c_
  • Chain 'D':
    Compound: Peptidyl-tRNA hydrolase
    Species: Methanocaldococcus jannaschii [TaxId:243232]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zv3d_
  • Chain 'E':
    Compound: Peptidyl-tRNA hydrolase
    Species: Methanocaldococcus jannaschii [TaxId:243232]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zv3e_
  • Chain 'F':
    Compound: Peptidyl-tRNA hydrolase
    Species: Methanocaldococcus jannaschii [TaxId:243232]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zv3f_
  • Chain 'G':
    Compound: Peptidyl-tRNA hydrolase
    Species: Methanocaldococcus jannaschii [TaxId:243232]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zv3g_
  • Chain 'H':
    Compound: Peptidyl-tRNA hydrolase
    Species: Methanocaldococcus jannaschii [TaxId:243232]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zv3h_
  • Chain 'I':
    Compound: Peptidyl-tRNA hydrolase
    Species: Methanocaldococcus jannaschii [TaxId:243232]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zv3i_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2zv3A (A:)
    mkmvvvirndlgmgkgkmvaqgghaiieafldakrknpravdewlregqkkvvvkvnsek
    elidiynkarseglpcsiirdaghtqlepgtltavaigpekdekidkitghlkll
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zv3A (A:)
    mkmvvvirndlgmgkgkmvaqgghaiieafldakrknpravdewlregqkkvvvkvnsek
    elidiynkarseglpcsiirdagtltavaigpekdekidkitghlkll
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2zv3B (B:)
    mkmvvvirndlgmgkgkmvaqgghaiieafldakrknpravdewlregqkkvvvkvnsek
    elidiynkarseglpcsiirdaghtqlepgtltavaigpekdekidkitghlkll
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2zv3C (C:)
    mkmvvvirndlgmgkgkmvaqgghaiieafldakrknpravdewlregqkkvvvkvnsek
    elidiynkarseglpcsiirdaghtqlepgtltavaigpekdekidkitghlkll
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zv3C (C:)
    mkmvvvirndlgmgkgkmvaqgghaiieafldakrknpravdewlregqkkvvvkvnsek
    elidiynkarseglpcsiirdaghpgtltavaigpekdekidkitghlkll
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2zv3D (D:)
    mkmvvvirndlgmgkgkmvaqgghaiieafldakrknpravdewlregqkkvvvkvnsek
    elidiynkarseglpcsiirdaghtqlepgtltavaigpekdekidkitghlkll
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2zv3E (E:)
    mkmvvvirndlgmgkgkmvaqgghaiieafldakrknpravdewlregqkkvvvkvnsek
    elidiynkarseglpcsiirdaghtqlepgtltavaigpekdekidkitghlkll
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2zv3F (F:)
    mkmvvvirndlgmgkgkmvaqgghaiieafldakrknpravdewlregqkkvvvkvnsek
    elidiynkarseglpcsiirdaghtqlepgtltavaigpekdekidkitghlkll
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >2zv3G (G:)
    mkmvvvirndlgmgkgkmvaqgghaiieafldakrknpravdewlregqkkvvvkvnsek
    elidiynkarseglpcsiirdaghtqlepgtltavaigpekdekidkitghlkll
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zv3G (G:)
    mkmvvvirndlgmgkgkmvaqgghaiieafldakrknpravdewlregqkkvvvkvnsek
    elidiynkarseglpcsiirdagpgtltavaigpekdekidkitghlkll
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >2zv3H (H:)
    mkmvvvirndlgmgkgkmvaqgghaiieafldakrknpravdewlregqkkvvvkvnsek
    elidiynkarseglpcsiirdaghtqlepgtltavaigpekdekidkitghlkll
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zv3H (H:)
    mkmvvvirndlgmgkgkmvaqgghaiieafldakrkavdewlregqkkvvvkvnsekeli
    diynkarseglpcsiirdaghtqlepgtltavaigpeghlkll
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >2zv3I (I:)
    mkmvvvirndlgmgkgkmvaqgghaiieafldakrknpravdewlregqkkvvvkvnsek
    elidiynkarseglpcsiirdaghtqlepgtltavaigpekdekidkitghlkll
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zv3I (I:)
    mkmvvvirndlgmgkgkmvaqgghaiieafldakrknpravdewlregqkkvvvkvnsek
    elidiynkarseglpcsiirdagqlepgtltavaigpekdekidkitghlkll