PDB entry 2zry

View 2zry on RCSB PDB site
Description: Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with reduced FMN and IPP.
Deposited on 2008-09-01, released 2009-01-20
The last revision was dated 2012-05-23, with a file datestamp of 2012-05-18.
Experiment type: XRAY
Resolution: 2.64 Å
R-factor: 0.185
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Sulfolobus shibatae [TaxId:2286]
    Gene: fni, idi
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Sulfolobus shibatae [TaxId:2286]
    Gene: fni, idi
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Sulfolobus shibatae [TaxId:2286]
    Gene: fni, idi
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Isopentenyl-diphosphate delta-isomerase
    Species: Sulfolobus shibatae [TaxId:2286]
    Gene: fni, idi
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FNR, IPE, MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2zryA (A:)
mpdivnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisv
pvmvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvapti
piianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklr
diskelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwk
aesaknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvl
ksaiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsi
yekvrkre

    Sequence, based on observed residues (ATOM records):
    >2zryA (A:)
divnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisvpv
mvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvaptipi
ianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklrdi
skelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwkae
saknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvlks
aiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsiye
kvrk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2zryB (B:)
mpdivnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisv
pvmvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvapti
piianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklr
diskelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwk
aesaknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvl
ksaiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsi
yekvrkre

    Sequence, based on observed residues (ATOM records):
    >2zryB (B:)
divnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisvpv
mvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvaptipi
ianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklrdi
skelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwkae
saknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvlks
aiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsiye
kvrk

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2zryC (C:)
mpdivnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisv
pvmvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvapti
piianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklr
diskelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwk
aesaknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvl
ksaiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsi
yekvrkre

    Sequence, based on observed residues (ATOM records):
    >2zryC (C:)
divnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisvpv
mvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvaptipi
ianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklrdi
skelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwkae
saknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvlks
aiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsiye
kvrk

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2zryD (D:)
mpdivnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisv
pvmvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvapti
piianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklr
diskelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwk
aesaknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvl
ksaiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsi
yekvrkre

    Sequence, based on observed residues (ATOM records):
    >2zryD (D:)
divnrkvehveiaafenvdglssstflndvilvhqgfpgisfseintktkffrkeisvpv
mvtgmtggrnelgrinkiiaevaekfgipmgvgsqrvaiekaearesfaivrkvaptipi
ianlgmpqlvkgyglkefqdaiqmieadaiavhlnpaqevfqpegepeyqiyaleklrdi
skelsvpiivkesgngismetakllysygiknfdtsgqggtnwiaiemirdirrgnwkae
saknfldwgvptaasimevrysvpdsflvgsggirsgldaakaialgadiagmalpvlks
aiegkesleqffrkiifelkaammltgskdvdalkktsivilgklkewaeyrginlsiye
kvrk