PDB entry 2zpk

View 2zpk on RCSB PDB site
Description: crystal structure of p20.1 fab fragment in complex with its antigen peptide
Deposited on 2008-07-16, released 2008-12-23
The last revision was dated 2019-12-25, with a file datestamp of 2019-12-20.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: IgG1-lambda P20.1 Fab (heavy chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZPK (0-215)
  • Chain 'I':
    Compound: IgG1-lambda P20.1 Fab (heavy chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZPK (0-End)
  • Chain 'L':
    Compound: IgG1-lambda P20.1 Fab (light chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZPK (0-211)
  • Chain 'M':
    Compound: IgG1-lambda P20.1 Fab (light chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZPK
  • Chain 'P':
    Compound: Proteinase-activated receptor 4
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: Proteinase-activated receptor 4
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'H':
    Sequence, based on SEQRES records:
    >2zpkH (H:)
eiqlvqsgpevqkpgetvrisckasgytfttagmqwvqkmpgkslkwigwintrsgvpky
aedfkgrfafsletsasiaylhinnlknedtatyfcaregpgfvywgqgtlvtvsaaktt
ppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytl
sssvtvpsstwpsetvtcnvahpasstkvdkkivpr

    Sequence, based on observed residues (ATOM records):
    >2zpkH (H:)
eiqlvqsgpevqkpgetvrisckasgytfttagmqwvqkmpgkslkwigwintrsgvpky
aedfkgrfafsletsasiaylhinnlknedtatyfcaregpgfvywgqgtlvtvsaaktt
ppsvyplapmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsssvtvps
stwpsetvtcnvahpasstkvdkkivpr

  • Chain 'I':
    Sequence, based on SEQRES records:
    >2zpkI (I:)
eiqlvqsgpevqkpgetvrisckasgytfttagmqwvqkmpgkslkwigwintrsgvpky
aedfkgrfafsletsasiaylhinnlknedtatyfcaregpgfvywgqgtlvtvsaaktt
ppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytl
sssvtvpsstwpsetvtcnvahpasstkvdkkivpr

    Sequence, based on observed residues (ATOM records):
    >2zpkI (I:)
eiqlvqsgpevqkpgetvrisckasgytfttagmqwvqkmpgkslkwigwintrsgvpky
aedfkgrfafsletsasiaylhinnlknedtatyfcaregpgfvywgqgtlvtvsaaktt
ppsvyplapsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsssvtvp
sstwpsetvtcnvahpasstkvdkkivp

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >2zpkL (L:)
etvvtqesalttspgetvtltcrsstgavttsnyanwvqekpdhlftglivgtnnrvpgv
pprfsgsligdkaaltitgaqtedeaiyfcalwysnhwvfgggtkltvlgqpksspsvtl
fppsseeletnkatlvctitdfypgvvtvdwkvdgtpvtqgmettqpskqsnnkymassy
ltltarawerhssyscqvtheghtvekslsra

  • Chain 'M':
    Sequence, based on SEQRES records:
    >2zpkM (M:)
etvvtqesalttspgetvtltcrsstgavttsnyanwvqekpdhlftglivgtnnrvpgv
pprfsgsligdkaaltitgaqtedeaiyfcalwysnhwvfgggtkltvlgqpksspsvtl
fppsseeletnkatlvctitdfypgvvtvdwkvdgtpvtqgmettqpskqsnnkymassy
ltltarawerhssyscqvtheghtvekslsra

    Sequence, based on observed residues (ATOM records):
    >2zpkM (M:)
tvvtqesalttspgetvtltcrsstgavttsnyanwvqekpdhlftglivgtnnrvpgvp
prfsgsligdkaaltitgaqtedeaiyfcalwysnhwvfgggtkltvlgqpksspsvtlf
ppsseeletnkatlvctitdfypgvvtvdwkvdgtpvtqgmettqpskqsnnkymassyl
tltarawerhssyscqvtheghtveksls

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >2zpkP (P:)
prgypgqv

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >2zpkQ (Q:)
prgypgqv