PDB entry 2zod

View 2zod on RCSB PDB site
Description: Crystal structure of selenophosphate synthetase from Aquifex aeolicus
Class: transferase
Keywords: FULL-LENGTH SELENOPHOSPHATE SYNTHETASE, TRANSFERASE, ATP-binding, Kinase, Magnesium, Nucleotide-binding, Selenium, Selenocysteine, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI
Deposited on 2008-05-09, released 2008-05-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-04-09, with a file datestamp of 2014-04-04.
Experiment type: XRAY
Resolution: 1.98 Å
R-factor: 0.204
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Selenide, water dikinase
    Species: Aquifex aeolicus [TaxId:63363]
    Gene: selD, aq_1030
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zoda1, d2zoda2
  • Chain 'B':
    Compound: Selenide, water dikinase
    Species: Aquifex aeolicus [TaxId:63363]
    Gene: selD, aq_1030
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zodb1, d2zodb2
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2zodA (A:)
gsggiegrhmvellklvrssgcaakvgpgdlqeilkgfniytdestlvsigddagvyehn
giiwvytvdiitpvvndpylwgaistanalsdvyamggipvnalaiscfnnceldieifr
evirgaldklreaktvllgghtiddkepkfglsvagicpegkyitqsgaqvgqlliltkp
igtgilikglkegilkeedineaienmlalndkarnlmlsldatactdvtgfgllghawn
icknsnigariffekvpyyqlsenlvkkkiypkgaienlnfvknylksnldnwklillsd
pvtsggllftinkeklekidetakelevnywiigetiaenvlevl

    Sequence, based on observed residues (ATOM records): (download) 
    >2zodA (A:)
ellklvrgdlqeilkgfniytddagvyehngiiwvytvdiitpvvndpylwgaistanal
sdvyamggipvnalaiscfnnceldieifrevirgaldklreaktvllgghtiddkepkf
glsvagicpegkyitqsgaqvgqlliltkpigtgilikglkegilkeedineaienmlal
ndkarnlmlsldatactdvtgfgllghawnicknsnigariffekvpyyqlsenlvkkki
ypkgaienlnfvknylksnldnwklillsdpvtsggllftinkeklekidetakelevny
wiigetiaenvlevl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2zodB (B:)
gsggiegrhmvellklvrssgcaakvgpgdlqeilkgfniytdestlvsigddagvyehn
giiwvytvdiitpvvndpylwgaistanalsdvyamggipvnalaiscfnnceldieifr
evirgaldklreaktvllgghtiddkepkfglsvagicpegkyitqsgaqvgqlliltkp
igtgilikglkegilkeedineaienmlalndkarnlmlsldatactdvtgfgllghawn
icknsnigariffekvpyyqlsenlvkkkiypkgaienlnfvknylksnldnwklillsd
pvtsggllftinkeklekidetakelevnywiigetiaenvlevl

    Sequence, based on observed residues (ATOM records): (download) 
    >2zodB (B:)
ellklvrsslqeilkgfniytdestlvsiagvyehngiiwvytvdiitpvvndpylwgai
stanalsdvyamggipvnalaiscfnnceldieifrevirgaldklreaktvllgghtid
dkepkfglsvagicpegkyitqsgaqvgqlliltkpigtgilikglkegilkeedineai
enmlalndkarnlmlsldatactdvtgfgllghawnicknsnigariffekvpyyqlsen
lvkkkiypkgaienlnfvknylksnldnwklillsdpvtsggllftinkeklekidetak
elevnywiigetiaenvlevl