PDB entry 2zkq

View 2zkq on RCSB PDB site
Description: Structure of a mammalian Ribosomal 40S subunit within an 80S complex obtained by docking homology models of the RNA and proteins into an 8.7 A cryo-EM map
Class: ribosomal protein/RNA
Keywords: protein-RNA complex, 40S ribosomal subunit, RIBOSOMAL PROTEIN-RNA COMPLEX
Deposited on 2008-03-27, released 2008-05-06
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: EM
Resolution: 8.7 Å
R-factor: N/A
AEROSPACI score: -0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 18S Ribosomal RNA
    Species: CANIS FAMILIARIS [TaxId:9615]
  • Chain 'B':
    Compound: RNA Expansion segment ES3
    Species: CANIS FAMILIARIS [TaxId:9615]
  • Chain 'C':
    Compound: RNA Expansion segment ES4
    Species: CANIS FAMILIARIS [TaxId:9615]
  • Chain 'D':
    Compound: RNA Expansion segment ES6 part I
    Species: CANIS FAMILIARIS [TaxId:9615]
  • Chain 'E':
    Compound: RNA Expansion segment ES6 part II
    Species: CANIS FAMILIARIS [TaxId:9615]
  • Chain 'F':
    Compound: RNA Expansion segment ES9
    Species: CANIS FAMILIARIS [TaxId:9615]
  • Chain 'G':
    Compound: RNA helix
    Species: CANIS FAMILIARIS [TaxId:9615]
  • Chain 'H':
    Compound: RNA helix
    Species: CANIS FAMILIARIS [TaxId:9615]
  • Chain 'a':
    Compound: 40S Ribosomal protein RACK1
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
  • Chain 'b':
    Compound: 40S Ribosomal protein SA
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
  • Chain 'c':
    Compound: 40S Ribosomal protein S3e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
    Domains in SCOPe 2.05: d2zkqc1
  • Chain 'd':
    Compound: 40S Ribosomal protein S9e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
  • Chain 'e':
    Compound: 40S Ribosomal protein S2e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
    Domains in SCOPe 2.05: d2zkqe1
  • Chain 'g':
    Compound: 40S Ribosomal protein S5e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ (Start-203)
  • Chain 'h':
    Compound: 40S Ribosomal protein S15ae
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ (Start-129)
    Domains in SCOPe 2.05: d2zkqh1
  • Chain 'i':
    Compound: 40S Ribosomal protein S16e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ (Start-145)
    Domains in SCOPe 2.05: d2zkqi1
  • Chain 'j':
    Compound: 40S Ribosomal protein S20e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
    Domains in SCOPe 2.05: d2zkqj1
  • Chain 'k':
    Compound: 40S Ribosomal protein S14e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
    Domains in SCOPe 2.05: d2zkqk1
  • Chain 'l':
    Compound: 40S Ribosomal protein S23e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
    Domains in SCOPe 2.05: d2zkql1
  • Chain 'm':
    Compound: 40S Ribosomal protein S18e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ (Start-151)
    Domains in SCOPe 2.05: d2zkqm1
  • Chain 'n':
    Compound: 40S Ribosomal protein S29e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
    Domains in SCOPe 2.05: d2zkqn1
  • Chain 'o':
    Compound: 40S Ribosomal protein S13e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
    Domains in SCOPe 2.05: d2zkqo1
  • Chain 'q':
    Compound: 40S Ribosomal protein S11e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
  • Chain 's':
    Compound: 40S Ribosomal protein S15e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
    Domains in SCOPe 2.05: d2zkqs1

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'a':
    No sequence available.

  • Chain 'b':
    No sequence available.

  • Chain 'c':
    Sequence, based on SEQRES records: (download)
    >2zkqc (c:)
    mavqiskkrkfvadgifkaelnefltrelaedgysgvevrvtptrteiiilatrtqnvlg
    ekgrrireltavvqkrfgfpegsvelyaekvatrglcaiaqaeslrykllgglavrracy
    gvlrfimesgakgcevvvsgklrgqraksmkfvdglmihsgdpvnyyvdtavrhvllrqg
    vlgikvkimlpwdptgkigpkkplpdhvsivepkdeilpttpiseqkggkpeppampqpv
    pta
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zkqc (c:)
    avqiskkrkfvadgifkaelnefltrelaedgysgvevrvtptrteiiilatrtqnvlge
    kgrrireltavvqkrfgfpegsvelyaekvatrglcaiaqaeslrykllgglavrracyg
    vlrfimesgakgcevvvsgklrgqraksmkfvdglmihsgdpvnyyvdtavrhvllrqgv
    lgikvkimlpwd
    

  • Chain 'd':
    No sequence available.

  • Chain 'e':
    Sequence, based on SEQRES records: (download)
    >2zkqe (e:)
    iidfylgaslkdevlkivpvqkqtragqrtrfkafvaigdhnghvglgvkcskevatair
    gaiilaklsivpvrrgywgnkigkphtvpckvtgrsgsvpvrlipaprgtgivsapvpkk
    llmmagiddcytsargctatlgnfakatfdaisktysyltpdlwketvftkspyqeftd
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zkqe (e:)
    slkdevlkivpvqkqtragqrtrfkafvaigdhnghvglgvkcskevatairgaiilakl
    sivpvrgywgnkigkphtvpckvtgrsgsvpvrlipaprgtgivsapvpkkllmmagidd
    cytsargctatlgnfakatfdaisktys
    

  • Chain 'g':
    No sequence available.

  • Chain 'h':
    Sequence, based on SEQRES records: (download)
    >2zkqh (h:)
    mvrmnvladalksinnaekrgkrqvlirpcskvivrfltvmmkhgyigefeiiddhragk
    ivvnltgrlnkcgvisprfdvqlkdlekwqnnllpsrqfgfivlttsagimdheearrkh
    tggkilgfff
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zkqh (h:)
    mnvladalksinnaekrgkrqvlirpcskvivrfltvmmkhgyigefeiiddhragkivv
    nltgrlnkcgvisprfdvqlkdlekwqnnllpsrqfgfivlttsagimdheearrkhtgg
    kilgfff
    

  • Chain 'i':
    Sequence, based on SEQRES records: (download)
    >2zkqi (i:)
    mpskgplqsvqvfgrkktatavahckrgnglikvngrplemieprtlqykllepvlllgk
    erfagvdirvrvkggghvaqiyairqsiskalvayyqkyvdeaskkeikdiliqydrtll
    vadprrceskkfggpgararyqksyr
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zkqi (i:)
    qsvqvfgrkktatavahckrgnglikvngrplemieprtlqykllepvlllgkerfagvd
    irvrvkggghvaqiyairqsiskalvayyqkyvdeaskkeikdiliqydrtlladprrce
    skkfggpgararyqksyr
    

  • Chain 'j':
    Sequence, based on SEQRES records: (download)
    >2zkqj (j:)
    mafkdtgktpvepevaihriritltsrnvkslekvcadlirgakeknlkvkgpvrmptkt
    lrittrktpcgegsktwdrfqmrihkrlidlhspseivkqitsisiepgvevevtiada
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zkqj (j:)
    riritltsrnvkslekvcadlirgakeknlkvkgpvrmptktlrittrktpcgegsktwd
    rfqmrihkrlidlhspseivkqitsisiepgvevevt
    

  • Chain 'k':
    Sequence, based on SEQRES records: (download)
    >2zkqk (k:)
    maprkgkekkeeqvislgpqvaegenvfgvchifasfndtfvhvtdlsgketicrvtggm
    kvkadrdesspyaamlaaqdvaqrckelgitalhiklratggnrtktpgpgaqsalrala
    rsgmkigriedvtpipsdstrrkggrrgrrl
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zkqk (k:)
    egenvfgvchifasfndtfvhvtdlsgketicrvtggmkvkadrdesspyaamlaaqdva
    qrckelgitalhiklratggnrtktpgpgaqsalralarsgmkigriedvtpipsdstrr
    kggrr
    

  • Chain 'l':
    Sequence, based on SEQRES records: (download)
    >2zkql (l:)
    mgkcrglrtarklrshrrdqkwhdkqykkahlgtalkanpfggashakgivlekvgveak
    qpnsairkcvrvqlikngkkitafvpndgclnfieendevlvagfgrkghavgdipgvrf
    kvvkvanvsllalykgkkerprs
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zkql (l:)
    qykkahlgtalkanpfggashakgivlekvgveakqpnsairkcvrvqlikngkkitafv
    pndgclnfieendevlvagfgrkghavgdipgvrfkvvkvanvsllalykgkker
    

  • Chain 'm':
    Sequence, based on SEQRES records: (download)
    >2zkqm (m:)
    mslvipekfqhilrvlntnidgrrkiafaitaikgvgrryahvvlrkadidltkragelt
    edevervitimqnprqykipdwflnrqkdvkdgkysqvlangldnklredlerlkkirah
    rglrhfwglrvrgqhtkttgrrgrtvgvskkk
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zkqm (m:)
    lrvlntnidgrrkiafaitaikgvgrryahvvlrkadidltkrageltedevervitimq
    nprqykipdwflnrqkdvkdgkysqvlangldnklredlerlkkirahrglrhfwglrvr
    gqhtkttgrrgrtvgvskkk
    

  • Chain 'n':
    Sequence, based on SEQRES records: (download)
    >2zkqn (n:)
    mghqqlywshprkfgqgsrscrvcsnrhglirkyglnmcrqcfrqyakdigfikld
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zkqn (n:)
    lywshprkfgqgsrscrvcsnrhglirkyglnmcrqcfrqyakdigfik
    

  • Chain 'o':
    Sequence, based on SEQRES records: (download)
    >2zkqo (o:)
    mpitkeekqkviqefarfpgdtgstevqvalltlrinrlsehlkvhkkdhhshrgllmmv
    gqrrrllrylqredperyralieklgirg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zkqo (o:)
    pitkeekqkviqefarfpgdtgstevqvalltlrinrlsehlkvhkkdhhshrgllmmvg
    qrrrllrylqredperyralieklg
    

  • Chain 'q':
    No sequence available.

  • Chain 's':
    Sequence, based on SEQRES records: (download)
    >2zkqs (s:)
    maeveqkkkrtfrkftyrgvdldqlldmsyeqlmqlysarqrrrlnrglrrkqhsllkrl
    rkakkeappmekpevvkthlrdmiilpemvgsmvgvyngktfnqveikpemighylgefs
    itykpvkhgrpgigathssrfiplk
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zkqs (s:)
    rrlnrglrrkqhsllkrlrkakkeappmekpevvkthlrdmiilpemvgsmvgvyngktf
    nqveikpemighylgefsitykpvkhgr