PDB entry 2zkq

View 2zkq on RCSB PDB site
Description: Structure of a mammalian Ribosomal 40S subunit within an 80S complex obtained by docking homology models of the RNA and proteins into an 8.7 A cryo-EM map
Class: ribosomal protein/RNA
Keywords: protein-RNA complex, 40S ribosomal subunit, RIBOSOMAL PROTEIN-RNA COMPLEX
Deposited on 2008-03-27, released 2008-05-06
The last revision prior to the SCOPe 2.02 freeze date was dated 2012-05-30, with a file datestamp of 2012-05-25.
Experiment type: EM
Resolution: 8.7 Å
R-factor: N/A
AEROSPACI score: -0 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 18S Ribosomal RNA
    Species: CANIS FAMILIARIS [TaxId:9615]
  • Chain 'B':
    Compound: RNA Expansion segment ES3
    Species: CANIS FAMILIARIS [TaxId:9615]
  • Chain 'C':
    Compound: RNA Expansion segment ES4
    Species: CANIS FAMILIARIS [TaxId:9615]
  • Chain 'D':
    Compound: RNA Expansion segment ES6 part I
    Species: CANIS FAMILIARIS [TaxId:9615]
  • Chain 'E':
    Compound: RNA Expansion segment ES6 part II
    Species: CANIS FAMILIARIS [TaxId:9615]
  • Chain 'F':
    Compound: RNA Expansion segment ES9
    Species: CANIS FAMILIARIS [TaxId:9615]
  • Chain 'G':
    Compound: RNA helix
    Species: CANIS FAMILIARIS [TaxId:9615]
  • Chain 'H':
    Compound: RNA helix
    Species: CANIS FAMILIARIS [TaxId:9615]
  • Chain 'a':
    Compound: 40S Ribosomal protein RACK1
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
  • Chain 'b':
    Compound: 40S Ribosomal protein SA
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
  • Chain 'c':
    Compound: 40S Ribosomal protein S3e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
    Domains in SCOPe 2.02: d2zkqc1
  • Chain 'd':
    Compound: 40S Ribosomal protein S9e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
  • Chain 'e':
    Compound: 40S Ribosomal protein S2e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
    Domains in SCOPe 2.02: d2zkqe1
  • Chain 'g':
    Compound: 40S Ribosomal protein S5e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ (Start-203)
  • Chain 'h':
    Compound: 40S Ribosomal protein S15ae
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ (Start-129)
    Domains in SCOPe 2.02: d2zkqh1
  • Chain 'i':
    Compound: 40S Ribosomal protein S16e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ (Start-145)
    Domains in SCOPe 2.02: d2zkqi1
  • Chain 'j':
    Compound: 40S Ribosomal protein S20e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
    Domains in SCOPe 2.02: d2zkqj1
  • Chain 'k':
    Compound: 40S Ribosomal protein S14e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
    Domains in SCOPe 2.02: d2zkqk1
  • Chain 'l':
    Compound: 40S Ribosomal protein S23e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
    Domains in SCOPe 2.02: d2zkql1
  • Chain 'm':
    Compound: 40S Ribosomal protein S18e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ (Start-151)
    Domains in SCOPe 2.02: d2zkqm1
  • Chain 'n':
    Compound: 40S Ribosomal protein S29e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
    Domains in SCOPe 2.02: d2zkqn1
  • Chain 'o':
    Compound: 40S Ribosomal protein S13e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
    Domains in SCOPe 2.02: d2zkqo1
  • Chain 'q':
    Compound: 40S Ribosomal protein S11e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
  • Chain 's':
    Compound: 40S Ribosomal protein S15e
    Species: CANIS FAMILIARIS [TaxId:9615]
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZKQ
    Domains in SCOPe 2.02: d2zkqs1

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'a':
    No sequence available.

  • Chain 'b':
    No sequence available.

  • Chain 'c':
    Sequence, based on SEQRES records: (download) 
    >2zkqc (c:)
mavqiskkrkfvadgifkaelnefltrelaedgysgvevrvtptrteiiilatrtqnvlg
ekgrrireltavvqkrfgfpegsvelyaekvatrglcaiaqaeslrykllgglavrracy
gvlrfimesgakgcevvvsgklrgqraksmkfvdglmihsgdpvnyyvdtavrhvllrqg
vlgikvkimlpwdptgkigpkkplpdhvsivepkdeilpttpiseqkggkpeppampqpv
pta

    Sequence, based on observed residues (ATOM records): (download) 
    >2zkqc (c:)
avqiskkrkfvadgifkaelnefltrelaedgysgvevrvtptrteiiilatrtqnvlge
kgrrireltavvqkrfgfpegsvelyaekvatrglcaiaqaeslrykllgglavrracyg
vlrfimesgakgcevvvsgklrgqraksmkfvdglmihsgdpvnyyvdtavrhvllrqgv
lgikvkimlpwd

  • Chain 'd':
    No sequence available.

  • Chain 'e':
    Sequence, based on SEQRES records: (download) 
    >2zkqe (e:)
iidfylgaslkdevlkivpvqkqtragqrtrfkafvaigdhnghvglgvkcskevatair
gaiilaklsivpvrrgywgnkigkphtvpckvtgrsgsvpvrlipaprgtgivsapvpkk
llmmagiddcytsargctatlgnfakatfdaisktysyltpdlwketvftkspyqeftd

    Sequence, based on observed residues (ATOM records): (download) 
    >2zkqe (e:)
slkdevlkivpvqkqtragqrtrfkafvaigdhnghvglgvkcskevatairgaiilakl
sivpvrgywgnkigkphtvpckvtgrsgsvpvrlipaprgtgivsapvpkkllmmagidd
cytsargctatlgnfakatfdaisktys

  • Chain 'g':
    No sequence available.

  • Chain 'h':
    Sequence, based on SEQRES records: (download) 
    >2zkqh (h:)
mvrmnvladalksinnaekrgkrqvlirpcskvivrfltvmmkhgyigefeiiddhragk
ivvnltgrlnkcgvisprfdvqlkdlekwqnnllpsrqfgfivlttsagimdheearrkh
tggkilgfff

    Sequence, based on observed residues (ATOM records): (download) 
    >2zkqh (h:)
mnvladalksinnaekrgkrqvlirpcskvivrfltvmmkhgyigefeiiddhragkivv
nltgrlnkcgvisprfdvqlkdlekwqnnllpsrqfgfivlttsagimdheearrkhtgg
kilgfff

  • Chain 'i':
    Sequence, based on SEQRES records: (download) 
    >2zkqi (i:)
mpskgplqsvqvfgrkktatavahckrgnglikvngrplemieprtlqykllepvlllgk
erfagvdirvrvkggghvaqiyairqsiskalvayyqkyvdeaskkeikdiliqydrtll
vadprrceskkfggpgararyqksyr

    Sequence, based on observed residues (ATOM records): (download) 
    >2zkqi (i:)
qsvqvfgrkktatavahckrgnglikvngrplemieprtlqykllepvlllgkerfagvd
irvrvkggghvaqiyairqsiskalvayyqkyvdeaskkeikdiliqydrtlladprrce
skkfggpgararyqksyr

  • Chain 'j':
    Sequence, based on SEQRES records: (download) 
    >2zkqj (j:)
mafkdtgktpvepevaihriritltsrnvkslekvcadlirgakeknlkvkgpvrmptkt
lrittrktpcgegsktwdrfqmrihkrlidlhspseivkqitsisiepgvevevtiada

    Sequence, based on observed residues (ATOM records): (download) 
    >2zkqj (j:)
riritltsrnvkslekvcadlirgakeknlkvkgpvrmptktlrittrktpcgegsktwd
rfqmrihkrlidlhspseivkqitsisiepgvevevt

  • Chain 'k':
    Sequence, based on SEQRES records: (download) 
    >2zkqk (k:)
maprkgkekkeeqvislgpqvaegenvfgvchifasfndtfvhvtdlsgketicrvtggm
kvkadrdesspyaamlaaqdvaqrckelgitalhiklratggnrtktpgpgaqsalrala
rsgmkigriedvtpipsdstrrkggrrgrrl

    Sequence, based on observed residues (ATOM records): (download) 
    >2zkqk (k:)
egenvfgvchifasfndtfvhvtdlsgketicrvtggmkvkadrdesspyaamlaaqdva
qrckelgitalhiklratggnrtktpgpgaqsalralarsgmkigriedvtpipsdstrr
kggrr

  • Chain 'l':
    Sequence, based on SEQRES records: (download) 
    >2zkql (l:)
mgkcrglrtarklrshrrdqkwhdkqykkahlgtalkanpfggashakgivlekvgveak
qpnsairkcvrvqlikngkkitafvpndgclnfieendevlvagfgrkghavgdipgvrf
kvvkvanvsllalykgkkerprs

    Sequence, based on observed residues (ATOM records): (download) 
    >2zkql (l:)
qykkahlgtalkanpfggashakgivlekvgveakqpnsairkcvrvqlikngkkitafv
pndgclnfieendevlvagfgrkghavgdipgvrfkvvkvanvsllalykgkker

  • Chain 'm':
    Sequence, based on SEQRES records: (download) 
    >2zkqm (m:)
mslvipekfqhilrvlntnidgrrkiafaitaikgvgrryahvvlrkadidltkragelt
edevervitimqnprqykipdwflnrqkdvkdgkysqvlangldnklredlerlkkirah
rglrhfwglrvrgqhtkttgrrgrtvgvskkk

    Sequence, based on observed residues (ATOM records): (download) 
    >2zkqm (m:)
lrvlntnidgrrkiafaitaikgvgrryahvvlrkadidltkrageltedevervitimq
nprqykipdwflnrqkdvkdgkysqvlangldnklredlerlkkirahrglrhfwglrvr
gqhtkttgrrgrtvgvskkk

  • Chain 'n':
    Sequence, based on SEQRES records: (download) 
    >2zkqn (n:)
mghqqlywshprkfgqgsrscrvcsnrhglirkyglnmcrqcfrqyakdigfikld

    Sequence, based on observed residues (ATOM records): (download) 
    >2zkqn (n:)
lywshprkfgqgsrscrvcsnrhglirkyglnmcrqcfrqyakdigfik

  • Chain 'o':
    Sequence, based on SEQRES records: (download) 
    >2zkqo (o:)
mpitkeekqkviqefarfpgdtgstevqvalltlrinrlsehlkvhkkdhhshrgllmmv
gqrrrllrylqredperyralieklgirg

    Sequence, based on observed residues (ATOM records): (download) 
    >2zkqo (o:)
pitkeekqkviqefarfpgdtgstevqvalltlrinrlsehlkvhkkdhhshrgllmmvg
qrrrllrylqredperyralieklg

  • Chain 'q':
    No sequence available.

  • Chain 's':
    Sequence, based on SEQRES records: (download) 
    >2zkqs (s:)
maeveqkkkrtfrkftyrgvdldqlldmsyeqlmqlysarqrrrlnrglrrkqhsllkrl
rkakkeappmekpevvkthlrdmiilpemvgsmvgvyngktfnqveikpemighylgefs
itykpvkhgrpgigathssrfiplk

    Sequence, based on observed residues (ATOM records): (download) 
    >2zkqs (s:)
rrlnrglrrkqhsllkrlrkakkeappmekpevvkthlrdmiilpemvgsmvgvyngktf
nqveikpemighylgefsitykpvkhgr