PDB entry 2zjd

View 2zjd on RCSB PDB site
Description: Crystal Structure of LC3-p62 complex
Class: Apoptosis inhibitor/Apoptosis
Keywords: p62, autophagy, LC3, microtubule-associated protein 1 light chain 3, Cytoplasm, Cytoplasmic vesicle, Lipoprotein, Membrane, Ubl conjugation pathway, Alternative splicing, Apoptosis, Differentiation, Endosome, Immune response, Metal-binding, Nucleus, Phosphoprotein, Zinc, Zinc-finger, Apoptosis inhibitor/Apoptosis COMPLEX
Deposited on 2008-03-05, released 2008-06-03
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 1.56 Å
R-factor: 0.203
AEROSPACI score: 0.59 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Microtubule-associated proteins 1A/1B light chain 3B precursor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d2zjda_
  • Chain 'B':
    Compound: undecameric peptide from Sequestosome-1
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Microtubule-associated proteins 1A/1B light chain 3B precursor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d2zjdc_
  • Chain 'D':
    Compound: undecameric peptide from Sequestosome-1
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2zjdA (A:)
    gplgsmpsektfkqrrtfeqrvedvrlireqhptkipviierykgekqlpvldktkflvp
    dhvnmselikiirrrlqlnanqaffllvnghsmvsvstpisevyesekdedgflymvyas
    qetfgmklsv
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zjdA (A:)
    psektfkqrrtfeqrvedvrlireqhptkipviierykgekqlpvldktkflvpdhvnms
    elikiirrrlqlnanqaffllvnghsmvsvstpisevyesekdedgflymvyasqetfgm
    k
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2zjdC (C:)
    gplgsmpsektfkqrrtfeqrvedvrlireqhptkipviierykgekqlpvldktkflvp
    dhvnmselikiirrrlqlnanqaffllvnghsmvsvstpisevyesekdedgflymvyas
    qetfgmklsv
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zjdC (C:)
    mpsektfkqrrtfeqrvedvrlireqhptkipviierykgekqlpvldktkflvpdhvnm
    selikiirrrlqlnanqaffllvnghsmvsvstpisevyesekdedgflymvyasqetfg
    mk
    

  • Chain 'D':
    No sequence available.