PDB entry 2zc4

View 2zc4 on RCSB PDB site
Description: Penicillin-binding protein 2X (PBP 2X) acyl-enzyme complex (tebipenem) from Streptococcus pneumoniae
Class: biosynthetic protein
Keywords: PEPTIDOGLYCAN SYNTHESIS, CELL WALL, PENICILLIN-BINDING, ANTIBIOTICS, TEBIPENEM, Antibiotic resistance, Cell cycle, Cell division, Cell shape, Cell wall biogenesis/degradation, Membrane, Secreted, Transmembrane, BIOSYNTHETIC PROTEIN
Deposited on 2007-11-02, released 2008-04-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.227
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: penicillin-binding protein 2x
    Species: Streptococcus pneumoniae
    Gene: PBPX
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: penicillin-binding protein 2x
    Species: Streptococcus pneumoniae
    Gene: PBPX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zc4b_
  • Chain 'C':
    Compound: penicillin-binding protein 2x
    Species: Streptococcus pneumoniae
    Gene: PBPX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zc4c1, d2zc4c2
  • Chain 'D':
    Compound: penicillin-binding protein 2x
    Species: Streptococcus pneumoniae
    Gene: PBPX
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: penicillin-binding protein 2x
    Species: Streptococcus pneumoniae
    Gene: PBPX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zc4e_
  • Chain 'F':
    Compound: penicillin-binding protein 2x
    Species: Streptococcus pneumoniae
    Gene: PBPX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zc4f1, d2zc4f2
  • Heterogens: SO4, TEB, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2zc4B (B:)
    lgnivpgteqvsqrtmdgkdvyttissplqsfmetqmdafqekvkgkymtatlvsaktge
    ilattqrptfdadtkegitedfvwrdilyqsnyepgstmkvmmlaaaidnntfpggevfn
    sselkiadatirdwdvnegltggrmmtfsqgfahssnvgmtlleqkmgdatwldylnrfk
    fgvptrfgltdeyagqlpadnivniaqssfgqgisvtqtqmiraftaiandgvmlepkfi
    saiydpndqtarksqkeivgnpvskdaasltrtnmvlvgtdpvygtmynhstgkptvtvp
    gqnvalksgtaqiadeknggylvgltdyifsavsmspaenpdfilyvtvqqpehysgiql
    gefanpilerasamkdslnlqttak
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zc4B (B:)
    rtmdgkdvyttissplqsfmetqmdafqekvkgkymtatlvsaktgeilattqrptfdad
    tkegitedfvwrdilyqsnyepgstmkvmmlaaaidnntfpggevfnsselkiadatird
    wdvnegltggrmmtfsqgfahssnvgmtlleqkmgdatwldylnrfkfgvptrfgltdey
    agqlpadnivniaqssfgqgisvtqtqmiraftaiandgvmlepkfisaiydpndqtark
    sqkeivgnpvskdaasltrtnmvlvgtdpvygtmynhstgkptvtvpgqnvalksgtaqi
    adeknggylvgltdyifsavsmspaenpdfilyvtvqqpehysgiqlgefanpilerasa
    mkdsln
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2zc4C (C:)
    aleqvsqqspypmpsvkdispgdlaeelrrnlvqpivvgtgtkiknssaeegknlapnqq
    vlilsdkaeevpdmygwtketaetlakwlnielefqgsgstvqkqdvrantaikdikkit
    ltlgd
    

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >2zc4E (E:)
    lgnivpgteqvsqrtmdgkdvyttissplqsfmetqmdafqekvkgkymtatlvsaktge
    ilattqrptfdadtkegitedfvwrdilyqsnyepgstmkvmmlaaaidnntfpggevfn
    sselkiadatirdwdvnegltggrmmtfsqgfahssnvgmtlleqkmgdatwldylnrfk
    fgvptrfgltdeyagqlpadnivniaqssfgqgisvtqtqmiraftaiandgvmlepkfi
    saiydpndqtarksqkeivgnpvskdaasltrtnmvlvgtdpvygtmynhstgkptvtvp
    gqnvalksgtaqiadeknggylvgltdyifsavsmspaenpdfilyvtvqqpehysgiql
    gefanpilerasamkdslnlqttak
    

    Sequence, based on observed residues (ATOM records): (download)
    >2zc4E (E:)
    rtmdgkdvyttissplqsfmetqmdafqekvkgkymtatlvsaktgeilattqrptfdad
    tkegitedfvwrdilyqsnyepgstmkvmmlaaaidnntfpggevfnsselkiadatird
    wdvnltggrmmtfsqgfahssnvgmtlleqkmgdatwldylnrfkfgvptrfgltdeyag
    qlpadnivniaqssfgqgisvtqtqmiraftaiandgvmlepkfisaiydpndqtarksq
    keivgnpvskdaasltrtnmvlvgtdpvygtmynhstgkptvtvpgqnvalksgtaqiad
    eknggylvgltdyifsavsmspaenpdfilyvtvqqpehysgiqlgefanpilerasamk
    dslnl
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2zc4F (F:)
    aleqvsqqspypmpsvkdispgdlaeelrrnlvqpivvgtgtkiknssaeegknlapnqq
    vlilsdkaeevpdmygwtketaetlakwlnielefqgsgstvqkqdvrantaikdikkit
    ltlgd