PDB entry 2zbt

View 2zbt on RCSB PDB site
Description: Crystal structure of pyridoxine biosynthesis protein from Thermus thermophilus HB8
Class: lyase
Keywords: Pyridoxine biosynthesis, LYASE, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI
Deposited on 2007-10-29, released 2007-12-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: 0.194
AEROSPACI score: 0.57 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pyridoxal biosynthesis lyase pdxS
    Species: Thermus thermophilus [TaxId:300852]
    Gene: pdxS
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZBT
    Domains in SCOPe 2.08: d2zbta_
  • Chain 'B':
    Compound: Pyridoxal biosynthesis lyase pdxS
    Species: Thermus thermophilus [TaxId:300852]
    Gene: pdxS
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZBT
    Domains in SCOPe 2.08: d2zbtb_
  • Chain 'C':
    Compound: Pyridoxal biosynthesis lyase pdxS
    Species: Thermus thermophilus [TaxId:300852]
    Gene: pdxS
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZBT
    Domains in SCOPe 2.08: d2zbtc_
  • Chain 'D':
    Compound: Pyridoxal biosynthesis lyase pdxS
    Species: Thermus thermophilus [TaxId:300852]
    Gene: pdxS
    Database cross-references and differences (RAF-indexed):
    • PDB 2ZBT
    Domains in SCOPe 2.08: d2zbtd_
  • Heterogens: MPD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2zbtA (A:)
meggmekgtfqiktgfaemfkggvimdvttpeqaviaeeagavavmalervpadiraqgg
varmsdpkiikeimaavsipvmakvrighfveamileaigvdfidesevltpadeehhid
kwkfkvpfvcgarnlgealrriaegaamirtkgeagtgnvveavrhartmwkeiryvqsl
redelmayakeigapfelvkwvhdhgrlpvvnfaaggiatpadaalmmhlgmdgvfvgsg
ifksgdprkraraivravahyndpevlaevsedlgepmvginldqlkeeerlakrgw

    Sequence, based on observed residues (ATOM records): (download) 
    >2zbtA (A:)
ggmekgtfqiktgfaemfkggvimdvttpeqaviaeeagavavmalervpadiraqggva
rmsdpkiikeimaavsipvmakvrighfveamileaigvdfidesevltpadeehhidkw
kfkvpfvcgarnlgealrriaegaamirtkgeagtgnvveavrhartmwkeiryvqslre
delmayakeigapfelvkwvhdhgrlpvvnfaaggiatpadaalmmhlgmdgvfvgsgif
ksgdprkraraivravahyndpevlaevsedlgepm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2zbtB (B:)
meggmekgtfqiktgfaemfkggvimdvttpeqaviaeeagavavmalervpadiraqgg
varmsdpkiikeimaavsipvmakvrighfveamileaigvdfidesevltpadeehhid
kwkfkvpfvcgarnlgealrriaegaamirtkgeagtgnvveavrhartmwkeiryvqsl
redelmayakeigapfelvkwvhdhgrlpvvnfaaggiatpadaalmmhlgmdgvfvgsg
ifksgdprkraraivravahyndpevlaevsedlgepmvginldqlkeeerlakrgw

    Sequence, based on observed residues (ATOM records): (download) 
    >2zbtB (B:)
mekgtfqiktgfaemfkggvimdvttpeqaviaeeagavavmalervpadiraqggvarm
sdpkiikeimaavsipvmakvrighfveamileaigvdfidesevltpadeehhidkwkf
kvpfvcgarnlgealrriaegaamirtkgeagtgnvveavrhartmwkeiryvqslrede
lmayakeigapfelvkwvhdhgrlpvvnfaaggiatpadaalmmhlgmdgvfvgsgifks
gdprkraraivravahyndpevlaevsedlgepm

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2zbtC (C:)
meggmekgtfqiktgfaemfkggvimdvttpeqaviaeeagavavmalervpadiraqgg
varmsdpkiikeimaavsipvmakvrighfveamileaigvdfidesevltpadeehhid
kwkfkvpfvcgarnlgealrriaegaamirtkgeagtgnvveavrhartmwkeiryvqsl
redelmayakeigapfelvkwvhdhgrlpvvnfaaggiatpadaalmmhlgmdgvfvgsg
ifksgdprkraraivravahyndpevlaevsedlgepmvginldqlkeeerlakrgw

    Sequence, based on observed residues (ATOM records): (download) 
    >2zbtC (C:)
tfqiktgfaemfkggvimdvttpeqaviaeeagavavmalervpadiraqggvarmsdpk
iikeimaavsipvmakvrighfveamileaigvdfidesevltpadeehhidkwkfkvpf
vcgarnlgealrriaegaamirtkgeagtgnvveavrhartmwkeiryvqslredelmay
akeigapfelvkwvhdhgrlpvvnfaaggiatpadaalmmhlgmdgvfvgsgifksgdpr
kraraivravahyndpevlaevsedlgepm

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2zbtD (D:)
meggmekgtfqiktgfaemfkggvimdvttpeqaviaeeagavavmalervpadiraqgg
varmsdpkiikeimaavsipvmakvrighfveamileaigvdfidesevltpadeehhid
kwkfkvpfvcgarnlgealrriaegaamirtkgeagtgnvveavrhartmwkeiryvqsl
redelmayakeigapfelvkwvhdhgrlpvvnfaaggiatpadaalmmhlgmdgvfvgsg
ifksgdprkraraivravahyndpevlaevsedlgepmvginldqlkeeerlakrgw

    Sequence, based on observed residues (ATOM records): (download) 
    >2zbtD (D:)
mekgtfqiktgfaemfkggvimdvttpeqaviaeeagavavmalervpadiraqggvarm
sdpkiikeimaavsipvmakvrighfveamileaigvdfidesevltpadeehhidkwkf
kvpfvcgarnlgealrriaegaamirtkgeagtgnvveavrhartmwkeiryvqslrede
lmayakeigapfelvkwvhdhgrlpvvnfaaggiatpadaalmmhlgmdgvfvgsgifks
gdprkraraivravahyndpevlaevsedlgepm