PDB entry 2z1m

View 2z1m on RCSB PDB site
Description: Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5
Class: lyase
Keywords: SHORT-CHAIN DEHYDROGENASE/REDUCTASE, LYASE, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI
Deposited on 2007-05-09, released 2007-11-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.2
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: GDP-D-mannose dehydratase
    Species: Aquifex aeolicus [TaxId:224324]
    Gene: rfbD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2z1ma_
  • Chain 'B':
    Compound: GDP-D-mannose dehydratase
    Species: Aquifex aeolicus [TaxId:224324]
    Gene: rfbD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2z1mb_
  • Chain 'C':
    Compound: GDP-D-mannose dehydratase
    Species: Aquifex aeolicus [TaxId:224324]
    Gene: rfbD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2z1mc_
  • Chain 'D':
    Compound: GDP-D-mannose dehydratase
    Species: Aquifex aeolicus [TaxId:224324]
    Gene: rfbD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2z1md_
  • Heterogens: NDP, GDP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2z1mA (A:)
msgkralitgirgqdgaylaklllekgyevygadrrsgefaswrlkelgiendvkiihmd
llefsniirtiekvqpdevynlaaqsfvgvsfeqpiltaevdaigvlrilealrtvkpdt
kfyqastsemfgkvqeipqtektpfyprspyavaklfghwitvnyreaynmfacsgilfn
hesplrgiefvtrkityslarikyglqdklvlgnlnakrdwgyapeyveamwlmmqqpep
ddyviatgethtvrefvekaakiagfdiewvgeginekgidrntgkvivevseeffrpae
vdilvgnpekamkklgwkprttfdelveimmeadlkrvrdrevsv

    Sequence, based on observed residues (ATOM records): (download) 
    >2z1mA (A:)
gkralitgirgqdgaylaklllekgyevygadrrsgefaswrlkelgiendvkiihmdll
efsniirtiekvqpdevynlaaqsfvgvsfeqpiltaevdaigvlrilealrtvkpdtkf
yqastsemfgkvqeipqtektpfyprspyavaklfghwitvnyreaynmfacsgilfnhe
splrgiefvtrkityslarikyglqdklvlgnlnakrdwgyapeyveamwlmmqqpepdd
yviatgethtvrefvekaakiagfdiewvgeginekgidrntgkvivevseeffrpaevd
ilvgnpekamkklgwkprttfdelveimmeadlkrvrd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2z1mB (B:)
msgkralitgirgqdgaylaklllekgyevygadrrsgefaswrlkelgiendvkiihmd
llefsniirtiekvqpdevynlaaqsfvgvsfeqpiltaevdaigvlrilealrtvkpdt
kfyqastsemfgkvqeipqtektpfyprspyavaklfghwitvnyreaynmfacsgilfn
hesplrgiefvtrkityslarikyglqdklvlgnlnakrdwgyapeyveamwlmmqqpep
ddyviatgethtvrefvekaakiagfdiewvgeginekgidrntgkvivevseeffrpae
vdilvgnpekamkklgwkprttfdelveimmeadlkrvrdrevsv

    Sequence, based on observed residues (ATOM records): (download) 
    >2z1mB (B:)
kralitgirgqdgaylaklllekgyevygadswrlkelgiendvkiihmdllefsniirt
iekvqpdevynlaaqsfvgvsfeqpiltaevdaigvlrilealrtvkpdtkfyqastsem
fgkvqeipqtektpfyprspyavaklfghwitvnyreaynmfacsgilfnhesplrgief
vtrkityslarikyglqdklvlgnlnakrdwgyapeyveamwlmmqqpepddyviatget
htvrefvekaakiagfdiewvgeginekgidrntgkvivevseeffrpdilvgnpekamk
klgwkprttfdelveimmeadlkrvrdrevsv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2z1mC (C:)
msgkralitgirgqdgaylaklllekgyevygadrrsgefaswrlkelgiendvkiihmd
llefsniirtiekvqpdevynlaaqsfvgvsfeqpiltaevdaigvlrilealrtvkpdt
kfyqastsemfgkvqeipqtektpfyprspyavaklfghwitvnyreaynmfacsgilfn
hesplrgiefvtrkityslarikyglqdklvlgnlnakrdwgyapeyveamwlmmqqpep
ddyviatgethtvrefvekaakiagfdiewvgeginekgidrntgkvivevseeffrpae
vdilvgnpekamkklgwkprttfdelveimmeadlkrvrdrevsv

    Sequence, based on observed residues (ATOM records): (download) 
    >2z1mC (C:)
gkralitgirgqdgaylaklllekgyevygadswrlkelgiendvkiihmdllefsniir
tiekvqpdevynlaaqsfvgvsfeqpiltaevdaigvlrilealrtvkpdtkfyqastse
mfgkvqeipqtektpfyprspyavaklfghwitvnyreaynmfacsgilfnhesplrgie
fvtrkityslarikyglqdklvlgnlnakrdwgyapeyveamwlmmqqpepddyviatge
thtvrefvekaakiagfdiewvgeginekgidrntgkvivevseeffrpaevdilvgnpe
kamkklgwkprttfdelveimmeadlkrvrdrevsv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2z1mD (D:)
msgkralitgirgqdgaylaklllekgyevygadrrsgefaswrlkelgiendvkiihmd
llefsniirtiekvqpdevynlaaqsfvgvsfeqpiltaevdaigvlrilealrtvkpdt
kfyqastsemfgkvqeipqtektpfyprspyavaklfghwitvnyreaynmfacsgilfn
hesplrgiefvtrkityslarikyglqdklvlgnlnakrdwgyapeyveamwlmmqqpep
ddyviatgethtvrefvekaakiagfdiewvgeginekgidrntgkvivevseeffrpae
vdilvgnpekamkklgwkprttfdelveimmeadlkrvrdrevsv

    Sequence, based on observed residues (ATOM records): (download) 
    >2z1mD (D:)
gkralitgirgqdgaylaklllekgyevygadrrsgefaswrlkelgiendvkiihmdll
efsniirtiekvqpdevynlaaqsfvgvsfeqpiltaevdaigvlrilealrtvkpdtkf
yqastsemfgkvqeipqtektpfyprspyavaklfghwitvnyreaynmfacsgilfnhe
splrgiefvtrkityslarikyglqdklvlgnlnakrdwgyapeyveamwlmmqqpepdd
yviatgethtvrefvekaakiagfdiewvgeginekgidrntgkvivevseeffrpaevd
ilvgnpekamkklgwkprttfdelveimmeadlkrvrd