PDB entry 2z1d

View 2z1d on RCSB PDB site
Description: Crystal structure of [NiFe] hydrogenase maturation protein, HypD from Thermococcus kodakaraensis
Deposited on 2007-05-08, released 2007-07-17
The last revision was dated 2014-11-12, with a file datestamp of 2014-11-07.
Experiment type: XRAY
Resolution: 2.07 Å
R-factor: 0.179
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hydrogenase expression/formation protein hypD
    Species: Thermococcus kodakarensis [TaxId:69014]
    Gene: hypD
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Hydrogenase expression/formation protein hypD
    Species: Thermococcus kodakarensis [TaxId:69014]
    Gene: hypD
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SF4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2z1dA (A:)
meepfeayrsrevamklvekireeaktldgeirimhvcgthedtvtrhgirsllpenvkv
vsgpgcpvcitpvedivamqlimrkareegeeiilttfgdmykiptpmgsfadlksegfd
vrivygifdtyriakenpdktvvhfspgfetttapaagmlnvaaqeelenfkiysvhrlt
ppavevllkqgtvfqgliapghvstiigvkgweyltekygipqvvagfepndvlmailml
irmykegeariineyeravkyegnvvaqkmidkffevvdakwralgvfpksglelrkewk
dfeirsfykvevpknlpdlekgcrcgavlrglalptdcplfgktctprhpvgpcmvsyeg
tcqifykygvlf

    Sequence, based on observed residues (ATOM records):
    >2z1dA (A:)
ayrsrevamklvekireeaktldgeirimhvcgthedtvtrhgirsllpenvkvvsgpgc
pvcitpvedivamqlimrkareegeeiilttfgdmykiptpmgsfadlksegfdvrivyg
ifdtyriakenpdktvvhfspgfetttapaagmlnvaaqeelenfkiysvhrltppavev
llkqgtvfqgliapghvstiigvkgweyltekygipqvvagfepndvlmailmlirmyke
geariineyeravkyegnvvaqkmidkffevvdakwralgvfpksglelrkewkdfeirs
fykvevpknlpdlekgcrcgavlrglalptdcplfgktctprhpvgpcmvsyegtcqify
kygvlf

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2z1dB (B:)
meepfeayrsrevamklvekireeaktldgeirimhvcgthedtvtrhgirsllpenvkv
vsgpgcpvcitpvedivamqlimrkareegeeiilttfgdmykiptpmgsfadlksegfd
vrivygifdtyriakenpdktvvhfspgfetttapaagmlnvaaqeelenfkiysvhrlt
ppavevllkqgtvfqgliapghvstiigvkgweyltekygipqvvagfepndvlmailml
irmykegeariineyeravkyegnvvaqkmidkffevvdakwralgvfpksglelrkewk
dfeirsfykvevpknlpdlekgcrcgavlrglalptdcplfgktctprhpvgpcmvsyeg
tcqifykygvlf

    Sequence, based on observed residues (ATOM records):
    >2z1dB (B:)
feayrsrevamklvekireeaktldgeirimhvcgthedtvtrhgirsllpenvkvvsgp
gcpvcitpvedivamqlimrkareegeeiilttfgdmykiptpmgsfadlksegfdvriv
ygifdtyriakenpdktvvhfspgfetttapaagmlnvaaqeelenfkiysvhrltppav
evllkqgtvfqgliapghvstiigvkgweyltekygipqvvagfepndvlmailmlirmy
kegeariineyeravkyegnvvaqkmidkffevvdakwralgvfpksglelrkewkdfei
rsfykvevpknlpdlekgcrcgavlrglalptdcplfgktctprhpvgpcmvsyegtcqi
fykygvlf