PDB entry 2yzr

View 2yzr on RCSB PDB site
Description: Crystal structure of pyridoxine biosynthesis protein from Methanocaldococcus jannaschii
Class: Lyase
Keywords: Redox protein, Lyase, Pyridoxal phosphate, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI
Deposited on 2007-05-06, released 2007-11-06
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.197
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pyridoxal biosynthesis lyase pdxS
    Species: METHANOCALDOCOCCUS JANNASCHII [TaxId:243232]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2yzra_
  • Chain 'B':
    Compound: Pyridoxal biosynthesis lyase pdxS
    Species: METHANOCALDOCOCCUS JANNASCHII [TaxId:243232]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2yzrb_
  • Chain 'C':
    Compound: Pyridoxal biosynthesis lyase pdxS
    Species: METHANOCALDOCOCCUS JANNASCHII [TaxId:243232]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2yzrc_
  • Heterogens: CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2yzrA (A:)
mkkgtdllkkgfakmvkhgvvmdvtnveqaqiaeeagavavmalervpadiraaggvarm
sdpalieeimdavsipvmakcrighttealvleaigvdmidesevltqadpffhiykkkf
nvpfvcgarnlgeavrriwegaamirtkgeagtgniveavrhmrlmneaiaqlqrmtdee
vygvakfyanryaelaktvregmglpatvlenepiyegftlaeiidglyevllevkklgr
lpvvnfaaggvatpadaalmmqlgsdgvfvgsgifksenpleraraiveatynydkpdiv
aevsknlgeamkgiditqiseaekmqyrgd

    Sequence, based on observed residues (ATOM records): (download) 
    >2yzrA (A:)
tdllkkgfakmvkhgvvmdvtnveqaqiaeeagavavmalervpadirggvarmsdpali
eeimdavsipvmakcrighttealvleaigvdmidesevltqadpffhiykkkfnvpfvc
garnlgeavrriwegaamirtkgeagtgniveavrhmrlmneaiaqlqrmtdeevygvak
fyanryaelaktvregmglpatvlenepiyegftlaeiidglyevllevkklgrlpvvnf
aaggvatpadaalmmqlgsdgvfvgsgifksenpleraraiveatynydkpdivaevskn
lgeamkg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2yzrB (B:)
mkkgtdllkkgfakmvkhgvvmdvtnveqaqiaeeagavavmalervpadiraaggvarm
sdpalieeimdavsipvmakcrighttealvleaigvdmidesevltqadpffhiykkkf
nvpfvcgarnlgeavrriwegaamirtkgeagtgniveavrhmrlmneaiaqlqrmtdee
vygvakfyanryaelaktvregmglpatvlenepiyegftlaeiidglyevllevkklgr
lpvvnfaaggvatpadaalmmqlgsdgvfvgsgifksenpleraraiveatynydkpdiv
aevsknlgeamkgiditqiseaekmqyrgd

    Sequence, based on observed residues (ATOM records): (download) 
    >2yzrB (B:)
mvkhgvvmdvtnveqaqiaeeagavavmalervpadiraaggvarmsdpalieeimdavs
ipvmakcrighttealvleaigvdmidesevltqadpffhiykkkfnvpfvcgarnlgea
vrriwegaamirtkgeagtgniveavrhmrlmneaiaqlqrmtdeevygvakfyanryae
laktvregmglpatvlenepiyegftlaeiidglyevllevkklgrlpvvnfaaggvatp
adaalmmqlgsdgvfvgsgifksenpleraraiveatynydkpdivaevsknlgeamkg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2yzrC (C:)
mkkgtdllkkgfakmvkhgvvmdvtnveqaqiaeeagavavmalervpadiraaggvarm
sdpalieeimdavsipvmakcrighttealvleaigvdmidesevltqadpffhiykkkf
nvpfvcgarnlgeavrriwegaamirtkgeagtgniveavrhmrlmneaiaqlqrmtdee
vygvakfyanryaelaktvregmglpatvlenepiyegftlaeiidglyevllevkklgr
lpvvnfaaggvatpadaalmmqlgsdgvfvgsgifksenpleraraiveatynydkpdiv
aevsknlgeamkgiditqiseaekmqyrgd

    Sequence, based on observed residues (ATOM records): (download) 
    >2yzrC (C:)
mvkhgvvmdvtnveqaqiaeeagavavmalervpadiraggvarmsdpalieeimdavsi
pvmakcrighttealvleaigvdmidesevltqadpffhiykkkfnvpfvcgarnlgeav
rriwegaamirtkgeagtgniveavrhmrlmneaiaqlqrmtdeevygvakfyanryael
aktvregmglpatvlenepiyegftlaeiidglyevllevkklgrlpvvnfaaggvatpa
daalmmqlgsdgvfvgsgifksenpleraraiveatynydkpdivaevsknlgeamkg