PDB entry 2yzd

View 2yzd on RCSB PDB site
Description: Crystal structure of uricase from Arthrobacter globiformis in complex with 8-azaxanthin (inhibitor)
Class: oxidoreductase
Keywords: uricase, oxidoreductase, 8-azaxanthin
Deposited on 2007-05-05, released 2008-05-06
The last revision prior to the SCOP 1.75 freeze date was dated 2008-05-06, with a file datestamp of 2008-05-02.
Experiment type: XRAY
Resolution: 2.24 Å
R-factor: 0.189
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uricase
    Species: Arthrobacter globiformis
    Database cross-references and differences (RAF-indexed):
    • PDB 2YZD
    Domains in SCOP 1.75: d2yzda1, d2yzda2
  • Chain 'B':
    Compound: Uricase
    Species: Arthrobacter globiformis
    Database cross-references and differences (RAF-indexed):
    • PDB 2YZD
    Domains in SCOP 1.75: d2yzdb1, d2yzdb2
  • Chain 'C':
    Compound: Uricase
    Species: Arthrobacter globiformis
    Database cross-references and differences (RAF-indexed):
    • PDB 2YZD
    Domains in SCOP 1.75: d2yzdc1, d2yzdc2
  • Chain 'D':
    Compound: Uricase
    Species: Arthrobacter globiformis
    Database cross-references and differences (RAF-indexed):
    • PDB 2YZD
    Domains in SCOP 1.75: d2yzdd1, d2yzdd2
  • Chain 'E':
    Compound: Uricase
    Species: Arthrobacter globiformis
    Database cross-references and differences (RAF-indexed):
    • PDB 2YZD
    Domains in SCOP 1.75: d2yzde1, d2yzde2
  • Chain 'F':
    Compound: Uricase
    Species: Arthrobacter globiformis
    Database cross-references and differences (RAF-indexed):
    • PDB 2YZD
    Domains in SCOP 1.75: d2yzdf1, d2yzdf2
  • Chain 'G':
    Compound: Uricase
    Species: Arthrobacter globiformis
    Database cross-references and differences (RAF-indexed):
    • PDB 2YZD
    Domains in SCOP 1.75: d2yzdg1, d2yzdg2
  • Chain 'H':
    Compound: Uricase
    Species: Arthrobacter globiformis
    Database cross-references and differences (RAF-indexed):
    • PDB 2YZD
    Domains in SCOP 1.75: d2yzdh1, d2yzdh2
  • Heterogens: AZA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2yzdA (A:)
mtataetstgtkvvlgqnqygkaevrlvkvtrntarheiqdlnvtsqlrgdfeaahtagd
nahvvatdtqkntvyafardgfatteefllrlgkhftegfdwvtggrwaaqqffwdrind
hdhafsrnksevrtavleisgseqaivagiegltvlkstgsefhgfprdkyttlqettdr
ilatdvsarwryntvevdfdavyasvrglllkafaethslalqqtmyemgraviethpei
deikmslpnkhhflvdlqpfgqdnpnevfyaadrpyglieatiqregsradhpiwsniag
fc

    Sequence, based on observed residues (ATOM records): (download) 
    >2yzdA (A:)
tkvvlgqnqygkaevrlvkvtrntarheiqdlnvtsqlrgdfeaahtagdnahvvatdtq
kntvyafardgfatteefllrlgkhftegfdwvtggrwaaqqffwdrindhdhafsrnks
evrtavleisgseqaivagiegltvlkstgsefhgfprdkyttlqettdrilatdvsarw
ryntvevdfdavyasvrglllkafaethslalqqtmyemgraviethpeideikmslpnk
hhflvdlqpfgqdnpnevfyaadrpyglieatiqregsradhpiwsn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2yzdB (B:)
mtataetstgtkvvlgqnqygkaevrlvkvtrntarheiqdlnvtsqlrgdfeaahtagd
nahvvatdtqkntvyafardgfatteefllrlgkhftegfdwvtggrwaaqqffwdrind
hdhafsrnksevrtavleisgseqaivagiegltvlkstgsefhgfprdkyttlqettdr
ilatdvsarwryntvevdfdavyasvrglllkafaethslalqqtmyemgraviethpei
deikmslpnkhhflvdlqpfgqdnpnevfyaadrpyglieatiqregsradhpiwsniag
fc

    Sequence, based on observed residues (ATOM records): (download) 
    >2yzdB (B:)
tkvvlgqnqygkaevrlvkvtrntarheiqdlnvtsqlrgdfeaahtagdnahvvatdtq
kntvyafardgfatteefllrlgkhftegfdwvtggrwaaqqffwdrindhdhafsrnks
evrtavleisgseqaivagiegltvlkstgsefhgfprdkyttlqettdrilatdvsarw
ryntvevdfdavyasvrglllkafaethslalqqtmyemgraviethpeideikmslpnk
hhflvdlqpfgqdnpnevfyaadrpyglieatiqregsradhpiwsn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2yzdC (C:)
mtataetstgtkvvlgqnqygkaevrlvkvtrntarheiqdlnvtsqlrgdfeaahtagd
nahvvatdtqkntvyafardgfatteefllrlgkhftegfdwvtggrwaaqqffwdrind
hdhafsrnksevrtavleisgseqaivagiegltvlkstgsefhgfprdkyttlqettdr
ilatdvsarwryntvevdfdavyasvrglllkafaethslalqqtmyemgraviethpei
deikmslpnkhhflvdlqpfgqdnpnevfyaadrpyglieatiqregsradhpiwsniag
fc

    Sequence, based on observed residues (ATOM records): (download) 
    >2yzdC (C:)
tkvvlgqnqygkaevrlvkvtrntarheiqdlnvtsqlrgdfeaahtagdnahvvatdtq
kntvyafardgfatteefllrlgkhftegfdwvtggrwaaqqffwdrindhdhafsrnks
evrtavleisgseqaivagiegltvlkstgsefhgfprdkyttlqettdrilatdvsarw
ryntvevdfdavyasvrglllkafaethslalqqtmyemgraviethpeideikmslpnk
hhflvdlqpfgqdnpnevfyaadrpyglieatiqregsradhpiwsn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2yzdD (D:)
mtataetstgtkvvlgqnqygkaevrlvkvtrntarheiqdlnvtsqlrgdfeaahtagd
nahvvatdtqkntvyafardgfatteefllrlgkhftegfdwvtggrwaaqqffwdrind
hdhafsrnksevrtavleisgseqaivagiegltvlkstgsefhgfprdkyttlqettdr
ilatdvsarwryntvevdfdavyasvrglllkafaethslalqqtmyemgraviethpei
deikmslpnkhhflvdlqpfgqdnpnevfyaadrpyglieatiqregsradhpiwsniag
fc

    Sequence, based on observed residues (ATOM records): (download) 
    >2yzdD (D:)
tkvvlgqnqygkaevrlvkvtrntarheiqdlnvtsqlrgdfeaahtagdnahvvatdtq
kntvyafardgfatteefllrlgkhftegfdwvtggrwaaqqffwdrindhdhafsrnks
evrtavleisgseqaivagiegltvlkstgsefhgfprdkyttlqettdrilatdvsarw
ryntvevdfdavyasvrglllkafaethslalqqtmyemgraviethpeideikmslpnk
hhflvdlqpfgqdnpnevfyaadrpyglieatiqregsradhpiwsn

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2yzdE (E:)
mtataetstgtkvvlgqnqygkaevrlvkvtrntarheiqdlnvtsqlrgdfeaahtagd
nahvvatdtqkntvyafardgfatteefllrlgkhftegfdwvtggrwaaqqffwdrind
hdhafsrnksevrtavleisgseqaivagiegltvlkstgsefhgfprdkyttlqettdr
ilatdvsarwryntvevdfdavyasvrglllkafaethslalqqtmyemgraviethpei
deikmslpnkhhflvdlqpfgqdnpnevfyaadrpyglieatiqregsradhpiwsniag
fc

    Sequence, based on observed residues (ATOM records): (download) 
    >2yzdE (E:)
tkvvlgqnqygkaevrlvkvtrntarheiqdlnvtsqlrgdfeaahtagdnahvvatdtq
kntvyafardgfatteefllrlgkhftegfdwvtggrwaaqqffwdrindhdhafsrnks
evrtavleisgseqaivagiegltvlkstgsefhgfprdkyttlqettdrilatdvsarw
ryntvevdfdavyasvrglllkafaethslalqqtmyemgraviethpeideikmslpnk
hhflvdlqpfgqdnpnevfyaadrpyglieatiqregsradhpiwsn

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2yzdF (F:)
mtataetstgtkvvlgqnqygkaevrlvkvtrntarheiqdlnvtsqlrgdfeaahtagd
nahvvatdtqkntvyafardgfatteefllrlgkhftegfdwvtggrwaaqqffwdrind
hdhafsrnksevrtavleisgseqaivagiegltvlkstgsefhgfprdkyttlqettdr
ilatdvsarwryntvevdfdavyasvrglllkafaethslalqqtmyemgraviethpei
deikmslpnkhhflvdlqpfgqdnpnevfyaadrpyglieatiqregsradhpiwsniag
fc

    Sequence, based on observed residues (ATOM records): (download) 
    >2yzdF (F:)
tkvvlgqnqygkaevrlvkvtrntarheiqdlnvtsqlrgdfeaahtagdnahvvatdtq
kntvyafardgfatteefllrlgkhftegfdwvtggrwaaqqffwdrindhdhafsrnks
evrtavleisgseqaivagiegltvlkstgsefhgfprdkyttlqettdrilatdvsarw
ryntvevdfdavyasvrglllkafaethslalqqtmyemgraviethpeideikmslpnk
hhflvdlqpfgqdnpnevfyaadrpyglieatiqregsradhpiwsn

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2yzdG (G:)
mtataetstgtkvvlgqnqygkaevrlvkvtrntarheiqdlnvtsqlrgdfeaahtagd
nahvvatdtqkntvyafardgfatteefllrlgkhftegfdwvtggrwaaqqffwdrind
hdhafsrnksevrtavleisgseqaivagiegltvlkstgsefhgfprdkyttlqettdr
ilatdvsarwryntvevdfdavyasvrglllkafaethslalqqtmyemgraviethpei
deikmslpnkhhflvdlqpfgqdnpnevfyaadrpyglieatiqregsradhpiwsniag
fc

    Sequence, based on observed residues (ATOM records): (download) 
    >2yzdG (G:)
tkvvlgqnqygkaevrlvkvtrntarheiqdlnvtsqlrgdfeaahtagdnahvvatdtq
kntvyafardgfatteefllrlgkhftegfdwvtggrwaaqqffwdrindhdhafsrnks
evrtavleisgseqaivagiegltvlkstgsefhgfprdkyttlqettdrilatdvsarw
ryntvevdfdavyasvrglllkafaethslalqqtmyemgraviethpeideikmslpnk
hhflvdlqpfgqdnpnevfyaadrpyglieatiqregsradhpiwsn

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2yzdH (H:)
mtataetstgtkvvlgqnqygkaevrlvkvtrntarheiqdlnvtsqlrgdfeaahtagd
nahvvatdtqkntvyafardgfatteefllrlgkhftegfdwvtggrwaaqqffwdrind
hdhafsrnksevrtavleisgseqaivagiegltvlkstgsefhgfprdkyttlqettdr
ilatdvsarwryntvevdfdavyasvrglllkafaethslalqqtmyemgraviethpei
deikmslpnkhhflvdlqpfgqdnpnevfyaadrpyglieatiqregsradhpiwsniag
fc

    Sequence, based on observed residues (ATOM records): (download) 
    >2yzdH (H:)
tkvvlgqnqygkaevrlvkvtrntarheiqdlnvtsqlrgdfeaahtagdnahvvatdtq
kntvyafardgfatteefllrlgkhftegfdwvtggrwaaqqffwdrindhdhafsrnks
evrtavleisgseqaivagiegltvlkstgsefhgfprdkyttlqettdrilatdvsarw
ryntvevdfdavyasvrglllkafaethslalqqtmyemgraviethpeideikmslpnk
hhflvdlqpfgqdnpnevfyaadrpyglieatiqregsradhpiwsn