PDB entry 2yye

View 2yye on RCSB PDB site
Description: Crystal structure of selenophosphate synthetase from Aquifex aeolicus complexed with AMPCPP
Class: Transferase
Keywords: Full-length selenophosphate synthetase complex with ATP-analog, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Transferase
Deposited on 2007-04-29, released 2008-04-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-01-22, with a file datestamp of 2014-01-17.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.173
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Selenide, water dikinase
    Species: Aquifex aeolicus [TaxId:224324]
    Gene: aq_1030
    Database cross-references and differences (RAF-indexed):
    • Uniprot O67139 (9-344)
      • expression tag (2-4)
    Domains in SCOPe 2.08: d2yyea1, d2yyea2, d2yyea3
  • Chain 'B':
    Compound: Selenide, water dikinase
    Species: Aquifex aeolicus [TaxId:224324]
    Gene: aq_1030
    Database cross-references and differences (RAF-indexed):
    • Uniprot O67139 (9-344)
      • expression tag (2-8)
    Domains in SCOPe 2.08: d2yyeb1, d2yyeb2, d2yyeb3
  • Heterogens: CO, PO4, APC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2yyeA (A:)
    gsggiegrhmvellklvrssgcaakvgpgdlqeilkgfniytdestlvsigddagvyehn
    giiwvytvdiitpvvndpylwgaistanalsdvyamggipvnalaiscfnnceldieifr
    evirgaldklreaktvllgghtiddkepkfglsvagicpegkyitqsgaqvgqlliltkp
    igtgilikglkegilkeedineaienmlalndkarnlmlsldatactdvtgfgllghawn
    icknsnigariffekvpyyqlsenlvkkkiypkgaienlnfvknylksnldnwklillsd
    pvtsggllftinkeklekidetakelevnywiigetiaenvlevl
    

    Sequence, based on observed residues (ATOM records): (download)
    >2yyeA (A:)
    ggimvellklvrssgcaakvgpgdlqeilkgfniytdestlvsigddagvyehngiiwvy
    tvdiitpvvndpylwgaistanalsdvyamggipvnalaiscfnnceldieifrevirga
    ldklreaktvllgghtiddkepkfglsvagicpegkyitqsgaqvgqlliltkpigtgil
    ikglkegilkeedineaienmlalndkarnlmlsldatactdvtgfgllghawnicknsn
    igariffekvpyyqlsenlvkkkiypkgaienlnfvknylksnldnwklillsdpvtsgg
    llftinkeklekidetakelevnywiigetiaenvlevl
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2yyeB (B:)
    gsggiegrhmvellklvrssgcaakvgpgdlqeilkgfniytdestlvsigddagvyehn
    giiwvytvdiitpvvndpylwgaistanalsdvyamggipvnalaiscfnnceldieifr
    evirgaldklreaktvllgghtiddkepkfglsvagicpegkyitqsgaqvgqlliltkp
    igtgilikglkegilkeedineaienmlalndkarnlmlsldatactdvtgfgllghawn
    icknsnigariffekvpyyqlsenlvkkkiypkgaienlnfvknylksnldnwklillsd
    pvtsggllftinkeklekidetakelevnywiigetiaenvlevl
    

    Sequence, based on observed residues (ATOM records): (download)
    >2yyeB (B:)
    ggiegrhmvellklvrssgcaakvgpgdlqeilkgfniytdestlvsigddagvyehngi
    iwvytvdiitpvvndpylwgaistanalsdvyamggipvnalaiscfnnceldieifrev
    irgaldklreaktvllgghtiddkepkfglsvagicpegkyitqsgaqvgqlliltkpig
    tgilikglkegilkeedineaienmlalndkarnlmlsldatactdvtgfgllghawnic
    knsnigariffekvpyyqlsenlvkkkiypkgaienlnfvknylksnldnwklillsdpv
    tsggllftinkeklekidetakelevnywiigetiaenvlevl