PDB entry 2yyd

View 2yyd on RCSB PDB site
Description: Crystal structure of selenophosphate synthetase
Class: transferase
Keywords: Full-length selenophosphate synthetase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE
Deposited on 2007-04-29, released 2008-05-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2008-05-27, with a file datestamp of 2008-05-23.
Experiment type: XRAY
Resolution: 1.98 Å
R-factor: 0.204
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Selenide, water dikinase
    Species: Aquifex aeolicus
    Gene: aq_1030
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2yyda1, d2yyda2
  • Chain 'B':
    Compound: Selenide, water dikinase
    Species: Aquifex aeolicus
    Gene: aq_1030
    Database cross-references and differences (RAF-indexed):
  • Heterogens: PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2yydA (A:)
gsggiegrhmvellklvrssgcaakvgpgdlqeilkgfniytdestlvsigddagvyehn
giiwvytvdiitpvvndpylwgaistanalsdvyamggipvnalaiscfnnceldieifr
evirgaldklreaktvllgghtiddkepkfglsvagicpegkyitqsgaqvgqlliltkp
igtgilikglkegilkeedineaienmlalndkarnlmlsldatactdvtgfgllghawn
icknsnigariffekvpyyqlsenlvkkkiypkgaienlnfvknylksnldnwklillsd
pvtsggllftinkeklekidetakelevnywiigetiaenvlevl

    Sequence, based on observed residues (ATOM records): (download) 
    >2yydA (A:)
ellklvrgdlqeilkgfniytddagvyehngiiwvytvdiitpvvndpylwgaistanal
sdvyamggipvnalaiscfnnceldieifrevirgaldklreaktvllgghtiddkepkf
glsvagicpegkyitqsgaqvgqlliltkpigtgilikglkegilkeedineaienmlal
ndkarnlmlsldatactdvtgfgllghawnicknsnigariffekvpyyqlsenlvkkki
ypkgaienlnfvknylksnldnwklillsdpvtsggllftinkeklekidetakelevny
wiigetiaenvlevl

  • Chain 'B':
    No sequence available.