PDB entry 2yxg

View 2yxg on RCSB PDB site
Description: Crystal structure of Dihyrodipicolinate Synthase (dapA)
Class: lyase
Keywords: MJ0244, DIHYDRODIPICOLINATE SYNTHASE, TIM beta/alpha-barrel fold, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, LYASE
Deposited on 2007-04-26, released 2007-10-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2010-02-09, with a file datestamp of 2010-02-05.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.161
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dihydrodipicolinate synthase
    Species: Methanocaldococcus jannaschii DSM 2661 [TaxId:243232]
    Gene: dapA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2yxga_
  • Chain 'B':
    Compound: Dihydrodipicolinate synthase
    Species: Methanocaldococcus jannaschii DSM 2661 [TaxId:243232]
    Gene: dapA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2yxgb_
  • Chain 'C':
    Compound: Dihydrodipicolinate synthase
    Species: Methanocaldococcus jannaschii DSM 2661 [TaxId:243232]
    Gene: dapA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2yxgc_
  • Chain 'D':
    Compound: Dihydrodipicolinate synthase
    Species: Methanocaldococcus jannaschii DSM 2661 [TaxId:243232]
    Gene: dapA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2yxgd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2yxgA (A:)
mfkgvypaiitpfknkevdfdgleeninfliengvsgivavgttgesptlsheehkkvie
kvvdvvngrvqviagagsncteeaielsvfaedvgadavlsitpyynkptqeglrkhfgk
vaesinlpivlynvpsrtavnlepktvkllaeeysnisavkeanpnlsqvselihdakit
vlsgndeltlpiialggkgvisvvanivpkefvemvnyalegdfekareihyklfplmka
mfietnpipvktalnmmgrpagelrlplcemseehkkilenvlkdlgli

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2yxgB (B:)
mfkgvypaiitpfknkevdfdgleeninfliengvsgivavgttgesptlsheehkkvie
kvvdvvngrvqviagagsncteeaielsvfaedvgadavlsitpyynkptqeglrkhfgk
vaesinlpivlynvpsrtavnlepktvkllaeeysnisavkeanpnlsqvselihdakit
vlsgndeltlpiialggkgvisvvanivpkefvemvnyalegdfekareihyklfplmka
mfietnpipvktalnmmgrpagelrlplcemseehkkilenvlkdlgli

    Sequence, based on observed residues (ATOM records): (download) 
    >2yxgB (B:)
fkgvypaiitpfknkevdfdgleeninfliengvsgivavgttgesptlsheehkkviek
vvdvvngrvqviagagsncteeaielsvfaedvgadavlsitpyynkptqeglrkhfgkv
aesinlpivlynvpsrtavnlepktvkllaeeysnisavkeanpnlsqvselihdakitv
lsgndeltlpiialggkgvisvvanivpkefvemvnyalegdfekareihyklfplmkam
fietnpipvktalnmmgrpagelrlplcemseehkkilenvlkdlgli

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2yxgC (C:)
mfkgvypaiitpfknkevdfdgleeninfliengvsgivavgttgesptlsheehkkvie
kvvdvvngrvqviagagsncteeaielsvfaedvgadavlsitpyynkptqeglrkhfgk
vaesinlpivlynvpsrtavnlepktvkllaeeysnisavkeanpnlsqvselihdakit
vlsgndeltlpiialggkgvisvvanivpkefvemvnyalegdfekareihyklfplmka
mfietnpipvktalnmmgrpagelrlplcemseehkkilenvlkdlgli

    Sequence, based on observed residues (ATOM records): (download) 
    >2yxgC (C:)
fkgvypaiitpfknkevdfdgleeninfliengvsgivavgttgesptlsheehkkviek
vvdvvngrvqviagagsncteeaielsvfaedvgadavlsitpyynkptqeglrkhfgkv
aesinlpivlynvpsrtavnlepktvkllaeeysnisavkeanpnlsqvselihdakitv
lsgndeltlpiialggkgvisvvanivpkefvemvnyalegdfekareihyklfplmkam
fietnpipvktalnmmgrpagelrlplcemseehkkilenvlkdlgli

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2yxgD (D:)
mfkgvypaiitpfknkevdfdgleeninfliengvsgivavgttgesptlsheehkkvie
kvvdvvngrvqviagagsncteeaielsvfaedvgadavlsitpyynkptqeglrkhfgk
vaesinlpivlynvpsrtavnlepktvkllaeeysnisavkeanpnlsqvselihdakit
vlsgndeltlpiialggkgvisvvanivpkefvemvnyalegdfekareihyklfplmka
mfietnpipvktalnmmgrpagelrlplcemseehkkilenvlkdlgli

    Sequence, based on observed residues (ATOM records): (download) 
    >2yxgD (D:)
fkgvypaiitpfknkevdfdgleeninfliengvsgivavgttgesptlsheehkkviek
vvdvvngrvqviagagsncteeaielsvfaedvgadavlsitpyynkptqeglrkhfgkv
aesinlpivlynvpsrtavnlepktvkllaeeysnisavkeanpnlsqvselihdakitv
lsgndeltlpiialggkgvisvvanivpkefvemvnyalegdfekareihyklfplmkam
fietnpipvktalnmmgrpagelrlplcemseehkkilenvlkdlgli