PDB entry 2yxd
View 2yxd on RCSB PDB site
Description: Crystal Structure of Cobalamin biosynthesis precorrin 8W decarboxylase (cbiT)
Class: transferase
Keywords: Alpha and beta protein (a/b) Class, Methyltransferase superfamily, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE
Deposited on
2007-04-26, released
2007-10-30
The last revision prior to the SCOPe 2.08 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.202
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating]
Species: METHANOCALDOCOCCUS JANNASCHII [TaxId:243232]
Gene: cbiT
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2yxda_ - Chain 'B':
Compound: Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating]
Species: METHANOCALDOCOCCUS JANNASCHII [TaxId:243232]
Gene: cbiT
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2yxdb_ - Heterogens: SO4, MES, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2yxdA (A:)
mkymipdeefirregvpitkeeiravsigklnlnkddvvvdvgcgsggmtveiakrckfv
yaidyldgaievtkqnlakfnikncqiikgraedvldklefnkafiggtkniekiieild
kkkinhivantivlenaakiinefesrgynvdavnvfisyakkipsghmflaknpitiik
avr
Sequence, based on observed residues (ATOM records): (download)
>2yxdA (A:)
mipdeefirregvpitkeeiravsigklnlnkddvvvdvgcgsggmtveiakrckfvyai
dyldgaievtkqnlakfnikncqiikgraedvldklefnkafiggtkniekiieildkkk
inhivantivlenaakiinefesrgynvdavnvfisyakkipsghmflaknpitiikavr
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2yxdB (B:)
mkymipdeefirregvpitkeeiravsigklnlnkddvvvdvgcgsggmtveiakrckfv
yaidyldgaievtkqnlakfnikncqiikgraedvldklefnkafiggtkniekiieild
kkkinhivantivlenaakiinefesrgynvdavnvfisyakkipsghmflaknpitiik
avr
Sequence, based on observed residues (ATOM records): (download)
>2yxdB (B:)
mipdeefirregvpitkeeiravsigklnlnkddvvvdvgcgsggmtveiakrckfvyai
dyldgaievtkqnlakfnikncqiikgraedvldklefnkafiggtkniekiieildkkk
inhivantivlenaakiinefesrgynvdavnvfisyakkipsghmflaknpitiikavr