PDB entry 2ywy

View 2ywy on RCSB PDB site
Description: Structure of new antigen receptor variable domain from sharks
Class: immune system
Keywords: ig vnar, 1-a-7, immune system
Deposited on 2007-04-23, released 2007-10-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.71 Å
R-factor: 0.189
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: new antigen receptor variable domain
    Species: Orectolobus maculatus [TaxId:168098]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ywya_
  • Chain 'B':
    Compound: new antigen receptor variable domain
    Species: Orectolobus maculatus [TaxId:168098]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ywyb_
  • Chain 'C':
    Compound: new antigen receptor variable domain
    Species: Orectolobus maculatus [TaxId:168098]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ywyc_
  • Chain 'D':
    Compound: new antigen receptor variable domain
    Species: Orectolobus maculatus [TaxId:168098]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ywyd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2ywyA (A:)
    awvdqtprsvtketgesltincalknaaddlertdwyrttlgstneqkisiggryvetvn
    kgsksfslrirdlrvedsgtykcgayfsdamsnysypipgekgagtvltvkaa
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2ywyB (B:)
    awvdqtprsvtketgesltincalknaaddlertdwyrttlgstneqkisiggryvetvn
    kgsksfslrirdlrvedsgtykcgayfsdamsnysypipgekgagtvltvkaa
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ywyB (B:)
    awvdqtprsvtketgesltincalknaaddlertdwyrttlgstneqkisiggryvetvn
    kgsksfslrirdlrvedsgtykcgayfspgekgagtvltvkaa
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2ywyC (C:)
    awvdqtprsvtketgesltincalknaaddlertdwyrttlgstneqkisiggryvetvn
    kgsksfslrirdlrvedsgtykcgayfsdamsnysypipgekgagtvltvkaa
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2ywyD (D:)
    awvdqtprsvtketgesltincalknaaddlertdwyrttlgstneqkisiggryvetvn
    kgsksfslrirdlrvedsgtykcgayfsdamsnysypipgekgagtvltvkaa
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ywyD (D:)
    awvdqtprsvtketgesltincalknaaddlertdwyrttlgstneqkisiggryvetvn
    kgsksfslrirdlrvedsgtykcgayfspgekgagtvltvkaa