PDB entry 2ywb

View 2ywb on RCSB PDB site
Description: Crystal structure of GMP synthetase from Thermus thermophilus
Class: ligase
Keywords: GMP synthetase, XMP binding, ATP binding, Purine nucleotide biosynthetic pathway, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, LIGASE
Deposited on 2007-04-20, released 2007-10-23
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.233
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: GMP synthase [glutamine-hydrolyzing]
    Species: Thermus thermophilus [TaxId:300852]
    Gene: GUAA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2ywba1, d2ywba2, d2ywba3
  • Chain 'B':
    Compound: GMP synthase [glutamine-hydrolyzing]
    Species: Thermus thermophilus [TaxId:300852]
    Gene: GUAA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2ywbb1, d2ywbb2, d2ywbb3
  • Chain 'C':
    Compound: GMP synthase [glutamine-hydrolyzing]
    Species: Thermus thermophilus [TaxId:300852]
    Gene: GUAA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2ywbc1, d2ywbc2, d2ywbc3
  • Chain 'D':
    Compound: GMP synthase [glutamine-hydrolyzing]
    Species: Thermus thermophilus [TaxId:300852]
    Gene: GUAA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2ywbd1, d2ywbd2, d2ywbd3
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2ywbA (A:)
    mvlvldfgsqytrliarrlrelrafslilpgdapleevlkhrpqalilsggprsvfdpda
    prpdprlfssglpllgicygmqllaqelggrveragraeygkalltrhegplfrglegev
    qvwmshqdavtapppgwrvvaeteenpvaaiaspdgraygvqfhpevahtpkgmqilenf
    lelagvkrdwtpehvleellrevreragkdrvllavsggvdsstlalllakagvdhlavf
    vdhgllrlgereevegalralgvnllvvdakerflkalkgvedpeekrkiigrefvaafs
    qvarergpfrflaqgtlypdviesagghgaakikshhnvgglpedlefellepfrllfkd
    evrelalllglpdtlrlrhpfpgpglavrvlgevteerleilrraddiftsllrewglye
    kvaqalavltpvrsvgvagderkygyvlalravttedfmtadwarlplefldeaarritr
    rvpeigrvvydltskppatiewe
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ywbA (A:)
    mvlvldfgsqytrliarrlrelrafslilpgdapleevlkhrpqalilsggprsvfdpda
    prpdprlfssglpllgicygmqllaqelggrveraeygkalltrhegplfrglegevqvw
    mshqdavtapppgwrvvaeteenpvaaiaspdgraygvqfhpevahtpkgmqilenflel
    agvkrdwtpehvleellrevreragkdrvllavsggvdsstlalllakagvdhlavfvdh
    gllrlgereevegalralgvnllvvdakerflkalkgvedpeekrkiigrefvaafsqva
    rergpfrflaqgtlypdvieglpedlefellepfrllfkdevrelalllglpdtlrlrhp
    fpgpglavrvlgevteerleilrraddiftsllrewglyekvaqalavltpvgyvlalra
    vttedfmtadwarlplefldeaarritrrvpeigrvvydltskppatiewe
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2ywbB (B:)
    mvlvldfgsqytrliarrlrelrafslilpgdapleevlkhrpqalilsggprsvfdpda
    prpdprlfssglpllgicygmqllaqelggrveragraeygkalltrhegplfrglegev
    qvwmshqdavtapppgwrvvaeteenpvaaiaspdgraygvqfhpevahtpkgmqilenf
    lelagvkrdwtpehvleellrevreragkdrvllavsggvdsstlalllakagvdhlavf
    vdhgllrlgereevegalralgvnllvvdakerflkalkgvedpeekrkiigrefvaafs
    qvarergpfrflaqgtlypdviesagghgaakikshhnvgglpedlefellepfrllfkd
    evrelalllglpdtlrlrhpfpgpglavrvlgevteerleilrraddiftsllrewglye
    kvaqalavltpvrsvgvagderkygyvlalravttedfmtadwarlplefldeaarritr
    rvpeigrvvydltskppatiewe
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ywbB (B:)
    mvlvldfgsqytrliarrlrelrafslilpgdapleevlkhrpqalilsggprsvfdpda
    prpdprlfssglpllgicygmqllaqelggrveraygkalltrhegplfrglegevqvwm
    shqdavtapppgwrvvaeteenpvaaiaspdgraygvqfhpevahtpkgmqilenflela
    gvkrdwtpehvleellrevreragkdrvllavsggvdsstlalllakagvdhlavfvdhg
    llrlgereevegalralgvnllvvdakerflkalkgvedpeekrkiigrefvaafsqvar
    ergpfrflaqgtlypdviefellepfrllfkdevrelalllglpdtlrlrhpfpgpglav
    rvlgevteerleilrraddiftsllrewglyekvaqalavltpvgyvlalravttedfmt
    adwarlplefldeaarritrrvpeigrvvydltskppatiewe
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2ywbC (C:)
    mvlvldfgsqytrliarrlrelrafslilpgdapleevlkhrpqalilsggprsvfdpda
    prpdprlfssglpllgicygmqllaqelggrveragraeygkalltrhegplfrglegev
    qvwmshqdavtapppgwrvvaeteenpvaaiaspdgraygvqfhpevahtpkgmqilenf
    lelagvkrdwtpehvleellrevreragkdrvllavsggvdsstlalllakagvdhlavf
    vdhgllrlgereevegalralgvnllvvdakerflkalkgvedpeekrkiigrefvaafs
    qvarergpfrflaqgtlypdviesagghgaakikshhnvgglpedlefellepfrllfkd
    evrelalllglpdtlrlrhpfpgpglavrvlgevteerleilrraddiftsllrewglye
    kvaqalavltpvrsvgvagderkygyvlalravttedfmtadwarlplefldeaarritr
    rvpeigrvvydltskppatiewe
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ywbC (C:)
    mvlvldfgsqytrliarrlrelrafslilpgdapleevlkhrpqalilsggprsvfdpda
    prpdprlfssglpllgicygmqllaqelggrveraygkalltrhegplfrglegevqvwm
    shqdavtapppgwrvvaeteenpvaaiaspdgraygvqfhpevahtpkgmqilenflela
    gvkrdwtpehvleellrevreragkdrvllavsggvdsstlalllakagvdhlavfvdhg
    llrlgereevegalralgvnllvvdakerflkalkgvedpeekrkiigrefvaafsqvar
    ergpfrflaqgtlypdviesaefellepfrllfkdevrelalllglpdtlrlrhpfpgpg
    lavrvlgevteerleilrraddiftsllrewglyekvaqalavltpvgyvlalravtted
    fmtadwarlplefldeaarritrrvpeigrvvydltskppatiewe
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2ywbD (D:)
    mvlvldfgsqytrliarrlrelrafslilpgdapleevlkhrpqalilsggprsvfdpda
    prpdprlfssglpllgicygmqllaqelggrveragraeygkalltrhegplfrglegev
    qvwmshqdavtapppgwrvvaeteenpvaaiaspdgraygvqfhpevahtpkgmqilenf
    lelagvkrdwtpehvleellrevreragkdrvllavsggvdsstlalllakagvdhlavf
    vdhgllrlgereevegalralgvnllvvdakerflkalkgvedpeekrkiigrefvaafs
    qvarergpfrflaqgtlypdviesagghgaakikshhnvgglpedlefellepfrllfkd
    evrelalllglpdtlrlrhpfpgpglavrvlgevteerleilrraddiftsllrewglye
    kvaqalavltpvrsvgvagderkygyvlalravttedfmtadwarlplefldeaarritr
    rvpeigrvvydltskppatiewe
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ywbD (D:)
    mvlvldfgsqytrliarrlrelrafslilpgdapleevlkhrpqalilsggprsvfdpda
    prpdprlfssglpllgicygmqllaqelggrverygkalltrhegplfrglegevqvwms
    hqdavtapppgwrvvaeteenpvaaiaspdgraygvqfhpevahtpkgmqilenflelag
    vkrdwtpehvleellrevreragkdrvllavsggvdsstlalllakagvdhlavfvdhgl
    lrlgereevegalralgvnllvvdakerflkalkgvedpeekrkiigrefvaafsqvare
    rgpfrflaqgtlypdvilefellepfrllfkdevrelalllglpdtlrlrhpfpgpglav
    rvlgevteerleilrraddiftsllrewglyekvaqalavltpvgyvlalravttedfmt
    adwarlplefldeaarritrrvpeigrvvydltskppatiewe