PDB entry 2yvk

View 2yvk on RCSB PDB site
Description: Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis
Deposited on 2007-04-13, released 2008-01-22
The last revision was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.212
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Methylthioribose-1-phosphate isomerase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: mtnA
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Methylthioribose-1-phosphate isomerase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: mtnA
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Methylthioribose-1-phosphate isomerase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: mtnA
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Methylthioribose-1-phosphate isomerase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: mtnA
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MRU, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2yvkA (A:)
    mgsshhhhhhssglvprgshmmthsfavprsvewketaitilnqqklpdeteylelttke
    dvfdaivtlkvrgapaigitaafglalaakdietdnvtefrrrledikqylnssrptain
    lswalerlshsvenaisvneaktnlvheaiqiqvedeetcrligqnalqlfkkgdrimti
    cnagsiatsrygtalapfylakqkdlglhiyacetrpvlqgsrltawelmqggidvtlit
    dsmaahtmkekqisavivgadriakngdtankigtyglailanafdipffvaaplstfdt
    kvkcgadipieerdpeevrqisgvrtapsnvpvfnpafditphdlisgiitekgimtgny
    eeeieqlfkgekvh
    

    Sequence, based on observed residues (ATOM records):
    >2yvkA (A:)
    mthsfavprsvewketaitilnqqklpdeteylelttkedvfdaivtlkvrgapaigita
    afglalaakdietdnvtefrrrledikqylnssrptainlswalerlshsvenaisvnea
    ktnlvheaiqiqvedeetcrligqnalqlfkkgdrimticnagsiatsrygtalapfyla
    kqkdlglhiyacetrpvlqgsrltawelmqggidvtlitdsmaahtmkekqisavivgad
    riakngdtankigtyglailanafdipffvaaplstfdtkvkcgadipieerdpeevrqi
    sgvrtapsnvpvfnpafditphdlisgiitekgimtgnyeeeieqlfkg
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2yvkB (B:)
    mgsshhhhhhssglvprgshmmthsfavprsvewketaitilnqqklpdeteylelttke
    dvfdaivtlkvrgapaigitaafglalaakdietdnvtefrrrledikqylnssrptain
    lswalerlshsvenaisvneaktnlvheaiqiqvedeetcrligqnalqlfkkgdrimti
    cnagsiatsrygtalapfylakqkdlglhiyacetrpvlqgsrltawelmqggidvtlit
    dsmaahtmkekqisavivgadriakngdtankigtyglailanafdipffvaaplstfdt
    kvkcgadipieerdpeevrqisgvrtapsnvpvfnpafditphdlisgiitekgimtgny
    eeeieqlfkgekvh
    

    Sequence, based on observed residues (ATOM records):
    >2yvkB (B:)
    mthsfavprsvewketaitilnqqklpdeteylelttkedvfdaivtlkvrgapaigita
    afglalaakdietdnvtefrrrledikqylnssrptainlswalerlshsvenaisvnea
    ktnlvheaiqiqvedeetcrligqnalqlfkkgdrimticnagsiatsrygtalapfyla
    kqkdlglhiyacetrpvlqgsrltawelmqggidvtlitdsmaahtmkekqisavivgad
    riakngdtankigtyglailanafdipffvaaplstfdtkvkcgadipieerdpeevrqi
    sgvrtapsnvpvfnpafditphdlisgiitekgimtgnyeeeieqlfkg
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2yvkC (C:)
    mgsshhhhhhssglvprgshmmthsfavprsvewketaitilnqqklpdeteylelttke
    dvfdaivtlkvrgapaigitaafglalaakdietdnvtefrrrledikqylnssrptain
    lswalerlshsvenaisvneaktnlvheaiqiqvedeetcrligqnalqlfkkgdrimti
    cnagsiatsrygtalapfylakqkdlglhiyacetrpvlqgsrltawelmqggidvtlit
    dsmaahtmkekqisavivgadriakngdtankigtyglailanafdipffvaaplstfdt
    kvkcgadipieerdpeevrqisgvrtapsnvpvfnpafditphdlisgiitekgimtgny
    eeeieqlfkgekvh
    

    Sequence, based on observed residues (ATOM records):
    >2yvkC (C:)
    mthsfavprsvewketaitilnqqklpdeteylelttkedvfdaivtlkvrgapaigita
    afglalaakdietdnvtefrrrledikqylnssrptainlswalerlshsvenaisvnea
    ktnlvheaiqiqvedeetcrligqnalqlfkkgdrimticnagsiatsrygtalapfyla
    kqkdlglhiyacetrpvlqgsrltawelmqggidvtlitdsmaahtmkekqisavivgad
    riakngdtankigtyglailanafdipffvaaplstfdtkvkcgadipieerdpeevrqi
    sgvrtapsnvpvfnpafditphdlisgiitekgimtgnyeeeieqlfkg
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2yvkD (D:)
    mgsshhhhhhssglvprgshmmthsfavprsvewketaitilnqqklpdeteylelttke
    dvfdaivtlkvrgapaigitaafglalaakdietdnvtefrrrledikqylnssrptain
    lswalerlshsvenaisvneaktnlvheaiqiqvedeetcrligqnalqlfkkgdrimti
    cnagsiatsrygtalapfylakqkdlglhiyacetrpvlqgsrltawelmqggidvtlit
    dsmaahtmkekqisavivgadriakngdtankigtyglailanafdipffvaaplstfdt
    kvkcgadipieerdpeevrqisgvrtapsnvpvfnpafditphdlisgiitekgimtgny
    eeeieqlfkgekvh
    

    Sequence, based on observed residues (ATOM records):
    >2yvkD (D:)
    mthsfavprsvewketaitilnqqklpdeteylelttkedvfdaivtlkvrgapaigita
    afglalaakdietdnvtefrrrledikqylnssrptainlswalerlshsvenaisvnea
    ktnlvheaiqiqvedeetcrligqnalqlfkkgdrimticnagsiatsrygtalapfyla
    kqkdlglhiyacetrpvlqgsrltawelmqggidvtlitdsmaahtmkekqisavivgad
    riakngdtankigtyglailanafdipffvaaplstfdtkvkcgadipieerdpeevrqi
    sgvrtapsnvpvfnpafditphdlisgiitekgimtgnyeeeieqlfkg