PDB entry 2yvh

View 2yvh on RCSB PDB site
Description: Crystal structure of the operator-binding form of the multi-drug binding transcriptional repressor CgmR
Deposited on 2007-04-12, released 2008-04-15
The last revision was dated 2010-10-13, with a file datestamp of 2010-10-08.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.222
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transcriptional regulator
    Species: Corynebacterium glutamicum [TaxId:196627]
    Gene: cgl2612
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Transcriptional regulator
    Species: Corynebacterium glutamicum [TaxId:196627]
    Gene: cgl2612
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Transcriptional regulator
    Species: Corynebacterium glutamicum [TaxId:196627]
    Gene: cgl2612
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Transcriptional regulator
    Species: Corynebacterium glutamicum [TaxId:196627]
    Gene: cgl2612
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 5'-d(*dtp*dap*dap*dcp*dtp*dgp*dtp*dap*dcp*dcp*dgp*dap*dcp*dc)-3'
    Species: synthetic, synthetic
  • Chain 'F':
    Compound: 5'-d(*dgp*dgp*dtp*dcp*dgp*dgp*dtp*dap*dcp*dap*dgp*dtp*dtp*da)-3'
    Species: synthetic, synthetic
  • Chain 'G':
    Compound: 5'-d(*dtp*dap*dap*dcp*dtp*dgp*dtp*dap*dcp*dcp*dgp*dap*dcp*dc)-3'
    Species: synthetic, synthetic
  • Chain 'H':
    Compound: 5'-d(*dgp*dgp*dtp*dcp*dgp*dgp*dtp*dap*dcp*dap*dgp*dtp*dtp*da)-3'
    Species: synthetic, synthetic
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2yvhA (A:)
mrtskkemilrtaidyigeysletlsydslaeatglsksgliyhfpsrhalllgmhella
ddwdkelrditrdpedplerlravvvtlaenvsrpellllidapshpdflnawrtvnhqw
ipdtddlendahkravylvqlaadglfvhdyihddvlskskrqamletilelipsqt

    Sequence, based on observed residues (ATOM records):
    >2yvhA (A:)
skkemilrtaidyigeysletlsydslaeatglsksgliyhfpsrhalllgmhelladdw
dkelrditrdpedplerlravvvtlaenvsrpellllidapshpdflnawrtvnhqwipd
tddlendahkravylvqlaadglfvhdyihddvlskskrqamletilelip

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2yvhB (B:)
mrtskkemilrtaidyigeysletlsydslaeatglsksgliyhfpsrhalllgmhella
ddwdkelrditrdpedplerlravvvtlaenvsrpellllidapshpdflnawrtvnhqw
ipdtddlendahkravylvqlaadglfvhdyihddvlskskrqamletilelipsqt

    Sequence, based on observed residues (ATOM records):
    >2yvhB (B:)
tskkemilrtaidyigeysletlsydslaeatglsksgliyhfpsrhalllgmhelladd
wdkelrditrdpedplerlravvvtlaenvsrpellllidapshpdflnawrtvnhqwip
dtddlendahkravylvqlaadglfvhdyihddvlskskrqamletilelip

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2yvhC (C:)
mrtskkemilrtaidyigeysletlsydslaeatglsksgliyhfpsrhalllgmhella
ddwdkelrditrdpedplerlravvvtlaenvsrpellllidapshpdflnawrtvnhqw
ipdtddlendahkravylvqlaadglfvhdyihddvlskskrqamletilelipsqt

    Sequence, based on observed residues (ATOM records):
    >2yvhC (C:)
skkemilrtaidyigeysletlsydslaeatglsksgliyhfpsrhalllgmhelladdw
dkelrditrdpedplerlravvvtlaenvsrpellllidapshpdflnawrtvnhqwipd
tddlendahkravylvqlaadglfvhdyihddvlskskrqamletilelip

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2yvhD (D:)
mrtskkemilrtaidyigeysletlsydslaeatglsksgliyhfpsrhalllgmhella
ddwdkelrditrdpedplerlravvvtlaenvsrpellllidapshpdflnawrtvnhqw
ipdtddlendahkravylvqlaadglfvhdyihddvlskskrqamletilelipsqt

    Sequence, based on observed residues (ATOM records):
    >2yvhD (D:)
tskkemilrtaidyigeysletlsydslaeatglsksgliyhfpsrhalllgmhelladd
wdkelrditrdpedplerlravvvtlaenvsrpellllidapshpdflnawrtvnhqwip
dtddlendahkravylvqlaadglfvhdyihddvlskskrqamletilelip

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.