PDB entry 2yvd

View 2yvd on RCSB PDB site
Description: Crystal structure of H400V mutant TTHA0252 from Thermus thermophilus HB8
Class: hydrolase
Keywords: beta-CASP family, metallo-beta-lactamase, ribonuclease, RNase E, Thermus thermophilus, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, HYDROLASE
Deposited on 2007-04-11, released 2008-04-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-08-04, with a file datestamp of 2009-07-31.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.238
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: metallo-beta-lactamase superfamily protein
    Species: Thermus thermophilus [TaxId:300852]
    Gene: TTHA0252
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5SLP1 (0-430)
      • engineered (399)
    Domains in SCOPe 2.08: d2yvda_
  • Chain 'B':
    Compound: metallo-beta-lactamase superfamily protein
    Species: Thermus thermophilus [TaxId:300852]
    Gene: TTHA0252
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5SLP1 (0-430)
      • engineered (399)
    Domains in SCOPe 2.08: d2yvdb_
  • Chain 'C':
    Compound: metallo-beta-lactamase superfamily protein
    Species: Thermus thermophilus [TaxId:300852]
    Gene: TTHA0252
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5SLP1 (0-430)
      • engineered (399)
    Domains in SCOPe 2.08: d2yvdc_
  • Chain 'D':
    Compound: metallo-beta-lactamase superfamily protein
    Species: Thermus thermophilus [TaxId:300852]
    Gene: TTHA0252
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5SLP1 (0-430)
      • engineered (399)
    Domains in SCOPe 2.08: d2yvdd_
  • Heterogens: ZN, SO4, BTB, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2yvdA (A:)
mrivpfgaarevtgsahlllaggrrvlldcgmfqgkeearnhapfgfdpkevdavlltha
hldhvgrlpklfregyrgpvyatratvllmeivledalkvmdepffgpedveealghlrp
leygewlrlgalslafgqaghlpgsafvvaqgegrtlvysgdlgnrekdvlpdpslppla
dlvlaegtygdrphrpyretvrefleilektlsqggkvliptfaveraqeilyvlythgh
rlprapiyldspmagrvlslyprlvryfseevqahflqgknpfrpaglevvehteaskal
nrapgpmvvlagsgmlaggrilhhlkhglsdprnalvfvgyqpqgglgaeiiarppavri
lgeevplrasvhtlggfsghagqdelldwlqgeprvvlvvgeeekllalgkllalrgqev
slarfgegvpv

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2yvdB (B:)
mrivpfgaarevtgsahlllaggrrvlldcgmfqgkeearnhapfgfdpkevdavlltha
hldhvgrlpklfregyrgpvyatratvllmeivledalkvmdepffgpedveealghlrp
leygewlrlgalslafgqaghlpgsafvvaqgegrtlvysgdlgnrekdvlpdpslppla
dlvlaegtygdrphrpyretvrefleilektlsqggkvliptfaveraqeilyvlythgh
rlprapiyldspmagrvlslyprlvryfseevqahflqgknpfrpaglevvehteaskal
nrapgpmvvlagsgmlaggrilhhlkhglsdprnalvfvgyqpqgglgaeiiarppavri
lgeevplrasvhtlggfsghagqdelldwlqgeprvvlvvgeeekllalgkllalrgqev
slarfgegvpv

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2yvdC (C:)
mrivpfgaarevtgsahlllaggrrvlldcgmfqgkeearnhapfgfdpkevdavlltha
hldhvgrlpklfregyrgpvyatratvllmeivledalkvmdepffgpedveealghlrp
leygewlrlgalslafgqaghlpgsafvvaqgegrtlvysgdlgnrekdvlpdpslppla
dlvlaegtygdrphrpyretvrefleilektlsqggkvliptfaveraqeilyvlythgh
rlprapiyldspmagrvlslyprlvryfseevqahflqgknpfrpaglevvehteaskal
nrapgpmvvlagsgmlaggrilhhlkhglsdprnalvfvgyqpqgglgaeiiarppavri
lgeevplrasvhtlggfsghagqdelldwlqgeprvvlvvgeeekllalgkllalrgqev
slarfgegvpv

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2yvdD (D:)
mrivpfgaarevtgsahlllaggrrvlldcgmfqgkeearnhapfgfdpkevdavlltha
hldhvgrlpklfregyrgpvyatratvllmeivledalkvmdepffgpedveealghlrp
leygewlrlgalslafgqaghlpgsafvvaqgegrtlvysgdlgnrekdvlpdpslppla
dlvlaegtygdrphrpyretvrefleilektlsqggkvliptfaveraqeilyvlythgh
rlprapiyldspmagrvlslyprlvryfseevqahflqgknpfrpaglevvehteaskal
nrapgpmvvlagsgmlaggrilhhlkhglsdprnalvfvgyqpqgglgaeiiarppavri
lgeevplrasvhtlggfsghagqdelldwlqgeprvvlvvgeeekllalgkllalrgqev
slarfgegvpv