PDB entry 2yri

View 2yri on RCSB PDB site
Description: Crystal structure of alanine-pyruvate aminotransferase with 2-methylserine
Deposited on 2007-04-02, released 2008-04-15
The last revision was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.191
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Aminotransferase, class V
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Aminotransferase, class V
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MMM, PMP, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2yriA (A:)
    mllltpgptpipervqkallrpmrghldpevlrvnraiqerlaalfdpgegalvaalags
    gslgmeaglanldrgpvlvlvngafsqrvaemaalhgldpevldfppgepvdpeavaral
    krrryrmvalvhgetstgvlnpaeaigalakeagalffldavttlgmlpfsmramgvdya
    ftgsqkclsappglapiaaslearkaftgkrgwyldlarvaehwerggyhhttpvllhya
    llealdlvleegvaarerrarevyawvleelkargfrpypkasplptvlvvrppegvdad
    rlvralyaegvavaggigptrgqvlrlglmgegarreayqaflkaldralala
    

    Sequence, based on observed residues (ATOM records):
    >2yriA (A:)
    mllltpgptpipervqkallrpmrghldpevlrvnraiqerlaalfdpgegalvaalags
    gslgmeaglanldrgpvlvlvngafsqrvaemaalhgldpevldfppgepvdpeavaral
    krrryrmvalvhgetstgvlnpaeaigalakeagalffldavttlgmlpfsmramgvdya
    ftgsqkclsappglapiaaslearkaftgkrgwyldlarvaehwerggyhhttpvllhya
    llealdlvleegvaarerrarevyawvleelkargfrpypkasplptvlvvrppegvdad
    rlvralyaegvavaggigptrgqvlrlglmgegarreayqaflkaldralal
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2yriB (B:)
    mllltpgptpipervqkallrpmrghldpevlrvnraiqerlaalfdpgegalvaalags
    gslgmeaglanldrgpvlvlvngafsqrvaemaalhgldpevldfppgepvdpeavaral
    krrryrmvalvhgetstgvlnpaeaigalakeagalffldavttlgmlpfsmramgvdya
    ftgsqkclsappglapiaaslearkaftgkrgwyldlarvaehwerggyhhttpvllhya
    llealdlvleegvaarerrarevyawvleelkargfrpypkasplptvlvvrppegvdad
    rlvralyaegvavaggigptrgqvlrlglmgegarreayqaflkaldralala
    

    Sequence, based on observed residues (ATOM records):
    >2yriB (B:)
    mllltpgptpipervqkallrpmrghldpevlrvnraiqerlaalfdpgegalvaalags
    gslgmeaglanldrgpvlvlvngafsqrvaemaalhgldpevldfppgepvdpeavaral
    krrryrmvalvhgetstgvlnpaeaigalakeagalffldavttlgmlpfsmramgvdya
    ftgsqkclsappglapiaaslearkaftgkrgwyldlarvaehwerggyhhttpvllhya
    llealdlvleegvaarerrarevyawvleelkargfrpypkasplptvlvvrppegvdad
    rlvralyaegvavaggigptrgqvlrlglmgegarreayqaflkaldralal