PDB entry 2yq4

View 2yq4 on RCSB PDB site
Description: Crystal Structure of D-isomer specific 2-hydroxyacid dehydrogenase from Lactobacillus delbrueckii ssp. bulgaricus
Deposited on 2012-11-05, released 2012-11-21
The last revision was dated 2013-02-20, with a file datestamp of 2013-02-15.
Experiment type: XRAY
Resolution: 3.45 Å
R-factor: 0.1828
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: d-isomer specific 2-hydroxyacid dehydrogenase
    Species: LACTOBACILLUS DELBRUECKII SUBSP. BULGARICUS [TaxId:1585]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: d-isomer specific 2-hydroxyacid dehydrogenase
    Species: LACTOBACILLUS DELBRUECKII SUBSP. BULGARICUS [TaxId:1585]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: d-isomer specific 2-hydroxyacid dehydrogenase
    Species: LACTOBACILLUS DELBRUECKII SUBSP. BULGARICUS [TaxId:1585]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: d-isomer specific 2-hydroxyacid dehydrogenase
    Species: LACTOBACILLUS DELBRUECKII SUBSP. BULGARICUS [TaxId:1585]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2yq4A (A:)
mtkiamynvspievpyiedwakkndveikttdqaltsatvdlaegcssvslkplgpvdee
vvyqklseygvkciglrivgfntinfdwtkkynllvtnvpvyspraiaemtvtqamyllr
kigefryrmdhdhdftwpsnlisneiynltvgligvghigsavaeifsamgakviaydva
ynpefepfltytdfdtvlkeadivslhtplfpstenmigekqlkemkksaylincargel
vdtgalikalqdgeiagagldtlagessyfghtgltdseipedyktlakmpnvvitphsa
fytetsirnmvqicltdqltiakggrprsivnltasghhhhhh

    Sequence, based on observed residues (ATOM records):
    >2yq4A (A:)
tkiamynvspievpyiedwakkndveikttdqaltsatvdlaegcssvslkplgpvdeev
vyqklseygvkciglrivgfntinfdwtkkllvtnvpvyspraiaemtvtqamyllrkig
efryrmdhdhdftwpsnlisneiynltvgligvghigsavaeifsamgakviaydvaynp
efepfltytdfdtvlkeadivslhtplfpstenmigekqlkemkksaylincargelvdt
galikalqdgeiagagldtlagessyfghtgltdseipedyktlakmpnvvitphsafyt
etsirnmvqicltdqltiakggrprsiv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2yq4B (B:)
mtkiamynvspievpyiedwakkndveikttdqaltsatvdlaegcssvslkplgpvdee
vvyqklseygvkciglrivgfntinfdwtkkynllvtnvpvyspraiaemtvtqamyllr
kigefryrmdhdhdftwpsnlisneiynltvgligvghigsavaeifsamgakviaydva
ynpefepfltytdfdtvlkeadivslhtplfpstenmigekqlkemkksaylincargel
vdtgalikalqdgeiagagldtlagessyfghtgltdseipedyktlakmpnvvitphsa
fytetsirnmvqicltdqltiakggrprsivnltasghhhhhh

    Sequence, based on observed residues (ATOM records):
    >2yq4B (B:)
tkiamynvspievpyiedwakkndveikttdqaltsatvdlaegcssvslkplgpvdeev
vyqklseygvkciglrivgfntinfdwtkllvtnvpvyspraiaemtvtqamyllrkige
fryrmdhdhdftwpsnlisneiynltvgligvghigsavaeifsamgakviaydvaynpe
fepfltytdfdtvlkeadivslhtplfpstenmigekqlkemkksaylincargelvdtg
alikalqdgeiagagldtlagessyfghtgltdseipedyktlakmpnvvitphsafyte
tsirnmvqicltdqltiakggrprsivn

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2yq4C (C:)
mtkiamynvspievpyiedwakkndveikttdqaltsatvdlaegcssvslkplgpvdee
vvyqklseygvkciglrivgfntinfdwtkkynllvtnvpvyspraiaemtvtqamyllr
kigefryrmdhdhdftwpsnlisneiynltvgligvghigsavaeifsamgakviaydva
ynpefepfltytdfdtvlkeadivslhtplfpstenmigekqlkemkksaylincargel
vdtgalikalqdgeiagagldtlagessyfghtgltdseipedyktlakmpnvvitphsa
fytetsirnmvqicltdqltiakggrprsivnltasghhhhhh

    Sequence, based on observed residues (ATOM records):
    >2yq4C (C:)
tkiamynvspievpyiedwakkndveikttdqaltsatvdlaegcssvslkplgpvdeev
vyqklseygvkciglrivgfntinfdwtkkynllvtnvpvyspraiaemtvtqamyllrk
igefryrmdhdhdftwpsnlisneiynltvgligvghigsavaeifsamgakviaydvay
npefepfltytdfdtvlkeadivslhtplfpstenmigekqlkemkksaylincargelv
dtgalikalqdgeiagagldtlagessyfghtgltdseipedyktlakmpnvvitphsaf
ytetsirnmvqicltdqltiakggrprsivn

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2yq4D (D:)
mtkiamynvspievpyiedwakkndveikttdqaltsatvdlaegcssvslkplgpvdee
vvyqklseygvkciglrivgfntinfdwtkkynllvtnvpvyspraiaemtvtqamyllr
kigefryrmdhdhdftwpsnlisneiynltvgligvghigsavaeifsamgakviaydva
ynpefepfltytdfdtvlkeadivslhtplfpstenmigekqlkemkksaylincargel
vdtgalikalqdgeiagagldtlagessyfghtgltdseipedyktlakmpnvvitphsa
fytetsirnmvqicltdqltiakggrprsivnltasghhhhhh

    Sequence, based on observed residues (ATOM records):
    >2yq4D (D:)
tkiamynvspievpyiedwakkndveikttdqaltsatvdlaegcssvslkplgpvdeev
vyqklseygvkciglrintinfdwtkllvtnvpvyspraiaemtvtqamyllrkigefry
rmdhdhdftwpsnlisneiynltvgligvghigsavaeifsamgakviaydvaynpefep
fltytdfdtvlkeadivslhtplfpstenmigekqlkemkksaylincargelvdtgali
kalqdgeiagagldtlagessyfghtgltdseipedyktlakmpnvvitphsafytetsi
rnmvqicltdqltiakgprsi