PDB entry 2ypz

View 2ypz on RCSB PDB site
Description: kshv lana (orf73) c-terminal domain, decameric ring: orthorhombic crystal form
Deposited on 2012-11-02, released 2013-11-13
The last revision was dated 2019-05-22, with a file datestamp of 2019-05-17.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: kshv lana
    Species: Human herpesvirus 8 type M [TaxId:435895]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: kshv lana
    Species: Human herpesvirus 8 type M [TaxId:435895]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: kshv lana
    Species: Human herpesvirus 8 type M [TaxId:435895]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: kshv lana
    Species: Human herpesvirus 8 type M [TaxId:435895]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: kshv lana
    Species: Human herpesvirus 8 type M [TaxId:435895]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: kshv lana
    Species: Human herpesvirus 8 type M [TaxId:435895]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q76SB0 (2-End)
      • expression tag (1)
  • Chain 'G':
    Compound: kshv lana
    Species: Human herpesvirus 8 type M [TaxId:435895]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: kshv lana
    Species: Human herpesvirus 8 type M [TaxId:435895]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: kshv lana
    Species: Human herpesvirus 8 type M [TaxId:435895]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: kshv lana
    Species: Human herpesvirus 8 type M [TaxId:435895]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2ypzA (A:)
gsryqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkk
lsqafqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplag
nlqssivkfkkplpltqpg

    Sequence, based on observed residues (ATOM records):
    >2ypzA (A:)
yqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkklsq
afqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplagnlq
ssivkfkkplpltqp

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2ypzB (B:)
gsryqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkk
lsqafqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplag
nlqssivkfkkplpltqpg

    Sequence, based on observed residues (ATOM records):
    >2ypzB (B:)
yqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkklsq
afqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplagnlq
ssivkfkkplpltq

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2ypzC (C:)
gsryqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkk
lsqafqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplag
nlqssivkfkkplpltqpg

    Sequence, based on observed residues (ATOM records):
    >2ypzC (C:)
yqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkklsq
afqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplagnlq
ssivkfkkplpltqp

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2ypzD (D:)
gsryqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkk
lsqafqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplag
nlqssivkfkkplpltqpg

    Sequence, based on observed residues (ATOM records):
    >2ypzD (D:)
yqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkklsq
afqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplagnlq
ssivkfkkplpltqp

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2ypzE (E:)
gsryqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkk
lsqafqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplag
nlqssivkfkkplpltqpg

    Sequence, based on observed residues (ATOM records):
    >2ypzE (E:)
yqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkklsq
afqfggvkagpvsclphpgpspitycvyvycqnkdtskkvqmarlaweashplagnlqss
ivkfkkplpltqp

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2ypzF (F:)
gsryqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkk
lsqafqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplag
nlqssivkfkkplpltqpg

    Sequence, based on observed residues (ATOM records):
    >2ypzF (F:)
sryqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkkl
sqafqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplagn
lqssivkfkkplpltqp

  • Chain 'G':
    Sequence, based on SEQRES records:
    >2ypzG (G:)
gsryqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkk
lsqafqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplag
nlqssivkfkkplpltqpg

    Sequence, based on observed residues (ATOM records):
    >2ypzG (G:)
yqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkklsq
afqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplagnlq
ssivkfkkplpltqp

  • Chain 'H':
    Sequence, based on SEQRES records:
    >2ypzH (H:)
gsryqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkk
lsqafqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplag
nlqssivkfkkplpltqpg

    Sequence, based on observed residues (ATOM records):
    >2ypzH (H:)
yqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkklsq
afqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplagnlq
ssivkfkkplplt

  • Chain 'I':
    Sequence, based on SEQRES records:
    >2ypzI (I:)
gsryqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkk
lsqafqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplag
nlqssivkfkkplpltqpg

    Sequence, based on observed residues (ATOM records):
    >2ypzI (I:)
yqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkklsq
afqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplagnlq
ssivkfkkplpltqp

  • Chain 'J':
    Sequence, based on SEQRES records:
    >2ypzJ (J:)
gsryqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkk
lsqafqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplag
nlqssivkfkkplpltqpg

    Sequence, based on observed residues (ATOM records):
    >2ypzJ (J:)
yqqppvpyrqiddcpakarpqhifyrrflgkdgrrdpkcqwkfavifwgndpyglkklsq
afqfggvkagpvsclphpgpdqspitycvyvycqnkdtskkvqmarlaweashplagnlq
ssivkfkkplpltqp