PDB entry 2yps

View 2yps on RCSB PDB site
Description: Crystal structure of the PX domain of human sorting nexin 3
Class: protein transport
Keywords: protein transport, endosome
Deposited on 2012-10-31, released 2013-03-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-24, with a file datestamp of 2018-01-19.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: sorting nexin-3
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O60493 (2-End)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d2ypsa1, d2ypsa2
  • Chain 'B':
    Compound: sorting nexin-3
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ypsb_
  • Chain 'C':
    Compound: sorting nexin-3
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ypsc_
  • Chain 'D':
    Compound: sorting nexin-3
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ypsd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2ypsA (A:)
smppsnfleidvsnpqtvgvgrgrfttyeirvktnlpifklkestvrrrysdfewlrsel
ereskvvvpplpgkaflrqlpfrgddgifddnfieerkqgleqfinkvaghplaqnercl
hmflqdeiidksyt

    Sequence, based on observed residues (ATOM records): (download) 
    >2ypsA (A:)
smppsnfleidvsnpgrgrfttyeirvktnlpifklkestvrrrysdfewlrseleresk
vvvpplpgkafnfieerkqgleqfinkvaghplaqnerclhmflqde

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2ypsB (B:)
smppsnfleidvsnpqtvgvgrgrfttyeirvktnlpifklkestvrrrysdfewlrsel
ereskvvvpplpgkaflrqlpfrgddgifddnfieerkqgleqfinkvaghplaqnercl
hmflqdeiidksyt

    Sequence, based on observed residues (ATOM records): (download) 
    >2ypsB (B:)
nfleidvsngrgrfttyeirvktnlpifklkestvrrrysdfewlrselereskvvvppl
pgkafdnfieerkqgleqfinkvaghplaqnerclhmflqde

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2ypsC (C:)
smppsnfleidvsnpqtvgvgrgrfttyeirvktnlpifklkestvrrrysdfewlrsel
ereskvvvpplpgkaflrqlpfrgddgifddnfieerkqgleqfinkvaghplaqnercl
hmflqdeiidksyt

    Sequence, based on observed residues (ATOM records): (download) 
    >2ypsC (C:)
nfleidvsngrgrfttyeirvktnlpifklkestvrrrysdfewlrselereskvvvppl
pgkafieerkqgleqfinkvaghplaqnerclhmflqd

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2ypsD (D:)
smppsnfleidvsnpqtvgvgrgrfttyeirvktnlpifklkestvrrrysdfewlrsel
ereskvvvpplpgkaflrqlpfrgddgifddnfieerkqgleqfinkvaghplaqnercl
hmflqdeiidksyt

    Sequence, based on observed residues (ATOM records): (download) 
    >2ypsD (D:)
nfleidvsngrgrfttyeirvktnlpifklkestvrrrysdfewlrselereskvvvppl
pgkafieerkqgleqfinkvaghplaqnerclhmflqdeii