PDB entry 2ypo

View 2ypo on RCSB PDB site
Description: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase with phenylalanine bound in only one site
Class: transferase
Keywords: shikimate pathway, transferase, aromatic amino acid biosynth allostery
Deposited on 2012-10-31, released 2013-01-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-05-08, with a file datestamp of 2013-05-03.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.13932
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: phospho-2-dehydro-3-deoxyheptonate aldolase arog
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ypoa_
  • Chain 'B':
    Compound: phospho-2-dehydro-3-deoxyheptonate aldolase arog
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ypob_
  • Heterogens: MN, SO4, GOL, PHE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2ypoA (A:)
    mnwtvdipidqlpslpplptdlrtrldaalakpaaqqptwpadqalamrtvlesvppvtv
    pseivrlqeqlaqvakgeafllqggdcaetfmdntephirgnvrallqmavvltygasmp
    vvkvariagqyakprsadidalglrsyrgdmingfapdaaarehdpsrlvrayanasaam
    nlvraltssglaslhlvhdwnrefvrtspagaryealateidrglrfmsacgvadrnlqt
    aeiyashealvldyeramlrlsdgddgepqlfdlsahtvwigertrqidgahiafaqvia
    npvgvklgpnmtpelaveyverldphnkpgrltlvsrmgnhkvrdllppivekvqatghq
    viwqcdpmhgnthesstgfktrhfdrivdevqgffevhralgthpggihveitgenvtec
    lggaqdisetdlagryetacdprlntqqslelaflvaemlrd
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ypoA (A:)
    mnwtvdipidlpplptdlrtrldaalakpaaqqptwpadqalamrtvlesvppvtvpsei
    vrlqeqlaqvakgeafllqggdcaetfmdntephirgnvrallqmavvltygasmpvvkv
    ariagqyakprsadidalglrsyrgdmingfapdaaarehdpsrlvrayanasaamnlvr
    altssglaslhlvhdwnrefvrtspagaryealateidrglrfmsacgvadrnlqtaeiy
    ashealvldyeramlrlsdgddgepqlfdlsahtvwigertrqidgahiafaqvianpvg
    vklgpnmtpelaveyverldphnkpgrltlvsrmgnhkvrdllppivekvqatghqviwq
    cdpmhgnthesstgfktrhfdrivdevqgffevhralgthpggihveitgenvteclgga
    qdisetdlagryetacdprlntqqslelaflvaemlrd
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2ypoB (B:)
    mnwtvdipidqlpslpplptdlrtrldaalakpaaqqptwpadqalamrtvlesvppvtv
    pseivrlqeqlaqvakgeafllqggdcaetfmdntephirgnvrallqmavvltygasmp
    vvkvariagqyakprsadidalglrsyrgdmingfapdaaarehdpsrlvrayanasaam
    nlvraltssglaslhlvhdwnrefvrtspagaryealateidrglrfmsacgvadrnlqt
    aeiyashealvldyeramlrlsdgddgepqlfdlsahtvwigertrqidgahiafaqvia
    npvgvklgpnmtpelaveyverldphnkpgrltlvsrmgnhkvrdllppivekvqatghq
    viwqcdpmhgnthesstgfktrhfdrivdevqgffevhralgthpggihveitgenvtec
    lggaqdisetdlagryetacdprlntqqslelaflvaemlrd
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ypoB (B:)
    mnwtvdipilpplptdlrtrldaalakpaaqqptwpadqalamrtvlesvppvtvpseiv
    rlqeqlaqvakgeafllqggdcaetfmdntephirgnvrallqmavvltygasmpvvkva
    riagqyakprsadidalglrsyrgdmingfapdaaarehdpsrlvrayanasaamnlvra
    ltssglaslhlvhdwnrefvrtspagaryealateidrglrfmsacgvadrnlqtaeiya
    shealvldyeramlrlsdgddgepqlfdlsahtvwigertrqidgahiafaqvianpvgv
    klgpnmtpelaveyverldphnkpgrltlvsrmgnhkvrdllppivekvqatghqviwqc
    dpmhgnthesstgfktrhfdrivdevqgffevhralgthpggihveitgenvteclggaq
    disetdlagryetacdprlntqqslelaflvaemlrd