PDB entry 2ypl
View 2ypl on RCSB PDB site
Description: Structural features underlying T-cell receptor sensitivity to concealed MHC class I micropolymorphisms
Deposited on
2012-10-30, released
2012-11-28
The last revision was dated
2013-01-16, with a file datestamp of
2013-01-11.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.22358
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: hla class I histocompatibility antigen, b-57 alpha chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P18465 (0-273)
- conflict (115)
- conflict (142)
- Chain 'B':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: kf11 p24 gag peptide
Species: HUMAN IMMUNODEFICIENCY VIRUS, synthetic [TaxId:12721]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: aga T-cell receptor alpha chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: aga T-cell receptor beta chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.
- Chain 'A':
Sequence; same for both SEQRES and ATOM records:
>2yplA (A:)
gshsmryfytamsrpgrgeprfiavgyvddtqfvrfdsdaasprmaprapwieqegpeyw
dgetrnmkasaqtyrenlrialryynqseagshiiqvmygcdvgpdgrllrghdqyaydg
kdyialnedlsswtaadtaaqiiqrkweaarvaeqlrayleglcvewlrrylengketlq
radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
fqkwaavvvpsgeeqrytchvqheglpkpltlrw
- Chain 'B':
Sequence; same for both SEQRES and ATOM records:
>2yplB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'C':
Sequence; same for both SEQRES and ATOM records:
>2yplC (C:)
kafspevipmf
- Chain 'D':
Sequence; same for both SEQRES and ATOM records:
>2yplD (D:)
edveqslflsvregdssvinctytdssstylywykqepgaglqlltyifsnmdmkqdqrl
tvllnkkdkhlslriadtqtgdsaiyfcavsggyqkvtfgigtklqvipniqnpdpavyq
lrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnksdf
acanafnnsiipedtffps
- Chain 'E':
Sequence; same for both SEQRES and ATOM records:
>2yplE (E:)
gitqspkylfrkegqnvtlsceqnlnhdamywyrqdpgqglrliyysqivndfqkgdiae
gysvsrekkesfpltvtsaqknptafylcastgsygytfgsgtrltvtedlknvfppeva
vfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpalnds
ryslssrlrvsatfwqnprnhfrcqvqftgsrrmtsgprigpkpvtqivsaeawgrad