PDB entry 2ypl

View 2ypl on RCSB PDB site
Description: Structural features underlying T-cell receptor sensitivity to concealed MHC class I micropolymorphisms
Deposited on 2012-10-30, released 2012-11-28
The last revision was dated 2013-01-16, with a file datestamp of 2013-01-11.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.22358
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hla class I histocompatibility antigen, b-57 alpha chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P18465 (0-273)
      • conflict (115)
      • conflict (142)
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: kf11 p24 gag peptide
    Species: HUMAN IMMUNODEFICIENCY VIRUS, synthetic [TaxId:12721]
    Database cross-references and differences (RAF-indexed):
    • PDB 2YPL (0-10)
  • Chain 'D':
    Compound: aga T-cell receptor alpha chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2YPL (0-198)
  • Chain 'E':
    Compound: aga T-cell receptor beta chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2YPL (0-237)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >2yplA (A:)
    gshsmryfytamsrpgrgeprfiavgyvddtqfvrfdsdaasprmaprapwieqegpeyw
    dgetrnmkasaqtyrenlrialryynqseagshiiqvmygcdvgpdgrllrghdqyaydg
    kdyialnedlsswtaadtaaqiiqrkweaarvaeqlrayleglcvewlrrylengketlq
    radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
    fqkwaavvvpsgeeqrytchvqheglpkpltlrw
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >2yplB (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >2yplC (C:)
    kafspevipmf
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >2yplD (D:)
    edveqslflsvregdssvinctytdssstylywykqepgaglqlltyifsnmdmkqdqrl
    tvllnkkdkhlslriadtqtgdsaiyfcavsggyqkvtfgigtklqvipniqnpdpavyq
    lrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnksdf
    acanafnnsiipedtffps
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >2yplE (E:)
    gitqspkylfrkegqnvtlsceqnlnhdamywyrqdpgqglrliyysqivndfqkgdiae
    gysvsrekkesfpltvtsaqknptafylcastgsygytfgsgtrltvtedlknvfppeva
    vfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpalnds
    ryslssrlrvsatfwqnprnhfrcqvqftgsrrmtsgprigpkpvtqivsaeawgrad