PDB entry 2yp5

View 2yp5 on RCSB PDB site
Description: Haemagglutinin of 2004 Human H3N2 Virus in Complex with Avian Receptor Analogue 3SLN
Class: viral protein
Keywords: viral protein, receptor binding, membrane fusion, influenza virus evolution, glycoprotein
Deposited on 2012-10-29, released 2012-11-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.79 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/Finland/486/2004 (H3N2)) [TaxId:348682]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2yp5a1
  • Heterogens: NAG, EPE, TAM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2yp5A (A:)
qklpgndnstatlclghhavpngtivktitndqievtnatelvqssstggicdsphqild
genctlidallgdpqcdgfqnkkwdlfverskaysncypydvpdyaslrslvassgtlef
nnesfnwtgvtqngtssackrrsnnsffsrlnwlthlkfkypalnvtmpnnekfdklyiw
gvhhpgtdndqislyaqasgritvstkrsqqtvipnigsrprvrdipsrisiywtivkpg
dillinstgnliaprgyfkirsgkssimrsdapigkcnsecitpngsipndkpfqnvnri
tygacpryvkqntlklatgmrnvpekqtqgifgaiagfiengwegmvdgwygfrhqnseg
igqaadlkstqaainqingklnrligktnekfhqiekefsevegriqdlekyvedtkidl
wsynaellvalenqhtidltdsemnklfertkkqlrenaedmgngcfkiyhkcdnacigs
irngtydhdvyrdealnnrfqik

    Sequence, based on observed residues (ATOM records): (download) 
    >2yp5A (A:)
nstatlclghhavpngtivktitndqievtnatelvqssstggicdsphqildgenctli
dallgdpqcdgfqnkkwdlfverskaysncypydvpdyaslrslvassgtlefnnesfnw
tgvtqngtssackrrsnnsffsrlnwlthlkfkypalnvtmpnnekfdklyiwgvhhpgt
dndqislyaqasgritvstkrsqqtvipnigsrprvrdipsrisiywtivkpgdillins
tgnliaprgyfkirsgkssimrsdapigkcnsecitpngsipndkpfqnvnritygacpr
yvkqntlklatgmrnvpekqtaiagfiengwegmvdgwygfrhqnsegigqaadlkstqa
ainqingklnrligktnekfhqiekefsevegriqdlekyvedtkidlwsynaellvale
nqhtidltdsemnklfertkkqlrenaedmgngcfkiyhkcdnacigsirngtydhdvyr
dealnnrfqik