PDB entry 2yog
View 2yog on RCSB PDB site
Description: Plasmodium falciparum thymidylate kinase in complex with a (thio)urea- alpha-deoxythymidine inhibitor
Class: transferase
Keywords: transferase, malaria, inhibitor
Deposited on
2012-10-24, released
2013-07-24
The last revision prior to the SCOPe 2.08 freeze date was dated
2013-07-24, with a file datestamp of
2013-07-19.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: 0.1848
AEROSPACI score: 0.64
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: thymidylate kinase
Species: PLASMODIUM FALCIPARUM [TaxId:36329]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2yoga_ - Chain 'B':
Compound: thymidylate kinase
Species: PLASMODIUM FALCIPARUM [TaxId:36329]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2yogb_ - Heterogens: 74X, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2yogA (A:)
mtddkkkgkfivfegldrsgkstqskllveylknnnvevkhlyfpnretgigqiiskylk
mensmsnetihllfsanrwehmneikslllkgiwvvcdryaysgvayssgalnlnktwcm
npdqglikpdvvfylnvppnyaqnrsdygeeiyekvetqkkiyetykhfahedywinida
trkiedihndivkevtkikvepeefnflws
Sequence, based on observed residues (ATOM records): (download)
>2yogA (A:)
dkkkgkfivfegldrsgkstqskllveylknnnvevkhlyfpnretgigqiiskylkmen
smsnetihllfsanrwehmneikslllkgiwvvcdryaysgvayssgalnlnktwcmnpd
qglikpdvvfylnvppnyiyekvetqkkiyetykhfahedywinidatrkiedihndivk
evtkikvepeefnflws
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2yogB (B:)
mtddkkkgkfivfegldrsgkstqskllveylknnnvevkhlyfpnretgigqiiskylk
mensmsnetihllfsanrwehmneikslllkgiwvvcdryaysgvayssgalnlnktwcm
npdqglikpdvvfylnvppnyaqnrsdygeeiyekvetqkkiyetykhfahedywinida
trkiedihndivkevtkikvepeefnflws
Sequence, based on observed residues (ATOM records): (download)
>2yogB (B:)
ddkkkgkfivfegldkstqskllveylknnnvevkhlyfpnretgigqiiskylkmensm
snetihllfsanrwehmneikslllkgiwvvcdryaysgvayssgalnlnktwcmnpdqg
likpdvvfylnvppnyaiyekvetqkkiyetykhfahedywinidatrkiedihndivke
vtkikvepeefnflws