PDB entry 2ynd

View 2ynd on RCSB PDB site
Description: Plasmodium vivax N-myristoyltransferase in complex with a pyrazole sulphonamide inhibitor.
Class: transferase
Keywords: transferase, myristoylation, malaria, pyrazole sulphonamide
Deposited on 2012-10-13, released 2014-01-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-02-05, with a file datestamp of 2014-01-31.
Experiment type: XRAY
Resolution: 1.89 Å
R-factor: 0.17045
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycylpeptide N-tetradecanoyltransferase
    Species: Plasmodium vivax [TaxId:5855]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ynda1
  • Chain 'B':
    Compound: Glycylpeptide N-tetradecanoyltransferase
    Species: Plasmodium vivax [TaxId:5855]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2yndb1
  • Chain 'C':
    Compound: Glycylpeptide N-tetradecanoyltransferase
    Species: Plasmodium vivax [TaxId:5855]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2yndc1
  • Heterogens: DMS, NHW, 646, SO4, MG, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2yndA (A:)
idykfwytqpvpkindefnesvnepfisdnkvedvrkdeyklppgyswyvcdvkdekdrs
eiytlltdnyvedddnifrfnysaefllwaltspnylktwhigvkydasnkligfisaip
tdicihkrtikmaevnflcvhktlrskrlapvlikeitrrinleniwqaiytagvylpkp
vsdaryyhrsinvkklieigfsslnsrltmsraiklyrvedtlniknmrlmkkkdvegvh
kllgsyleqfnlyavftkeeiahwflpienviytyvneengkikdmisfyslpsqilgnd
kystlnaaysfynvtttatfkqlmqdaillakrnnfdvfnalevmqnksvfedlkfgegd
gslkyylynwkcasfapahvgivll

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2yndB (B:)
idykfwytqpvpkindefnesvnepfisdnkvedvrkdeyklppgyswyvcdvkdekdrs
eiytlltdnyvedddnifrfnysaefllwaltspnylktwhigvkydasnkligfisaip
tdicihkrtikmaevnflcvhktlrskrlapvlikeitrrinleniwqaiytagvylpkp
vsdaryyhrsinvkklieigfsslnsrltmsraiklyrvedtlniknmrlmkkkdvegvh
kllgsyleqfnlyavftkeeiahwflpienviytyvneengkikdmisfyslpsqilgnd
kystlnaaysfynvtttatfkqlmqdaillakrnnfdvfnalevmqnksvfedlkfgegd
gslkyylynwkcasfapahvgivll

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2yndC (C:)
idykfwytqpvpkindefnesvnepfisdnkvedvrkdeyklppgyswyvcdvkdekdrs
eiytlltdnyvedddnifrfnysaefllwaltspnylktwhigvkydasnkligfisaip
tdicihkrtikmaevnflcvhktlrskrlapvlikeitrrinleniwqaiytagvylpkp
vsdaryyhrsinvkklieigfsslnsrltmsraiklyrvedtlniknmrlmkkkdvegvh
kllgsyleqfnlyavftkeeiahwflpienviytyvneengkikdmisfyslpsqilgnd
kystlnaaysfynvtttatfkqlmqdaillakrnnfdvfnalevmqnksvfedlkfgegd
gslkyylynwkcasfapahvgivll

    Sequence, based on observed residues (ATOM records): (download) 
    >2yndC (C:)
dykfwytqpvpkindefnesvnepfisdnkvedvrkdeyklppgyswyvcdvkdekdrse
iytlltdnyvedddnifrfnysaefllwaltspnylktwhigvkydasnkligfisaipt
dicihkrtikmaevnflcvhktlrskrlapvlikeitrrinleniwqaiytagvylpkpv
sdaryyhrsinvkklieigfrvedtlniknmrlmkkkdvegvhkllgsyleqfnlyavft
keeiahwflpienviytyvneengkikdmisfyslpsqilgndkystlnaaysfynvttt
atfkqlmqdaillakrnnfdvfnalevmqnksvfedlkfgegdgslkyylynwkcasfap
ahvgivll