PDB entry 2ync

View 2ync on RCSB PDB site
Description: Plasmodium vivax N-myristoyltransferase in complex with YnC12-CoA thioester.
Class: transferase
Keywords: transferase, myristoylation, malaria
Deposited on 2012-10-13, released 2014-01-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-02-05, with a file datestamp of 2014-01-31.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: 0.16147
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycylpeptide N-tetradecanoyltransferase
    Species: Plasmodium vivax [TaxId:5855]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ynca1
  • Chain 'B':
    Compound: Glycylpeptide N-tetradecanoyltransferase
    Species: Plasmodium vivax [TaxId:5855]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2yncb1
  • Chain 'C':
    Compound: Glycylpeptide N-tetradecanoyltransferase
    Species: Plasmodium vivax [TaxId:5855]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5K1A2 (0-383)
      • conflict (216)
    Domains in SCOPe 2.08: d2yncc1
  • Heterogens: DMS, YNC, SO4, MG, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2yncA (A:)
dykfwytqpvpkindefnesvnepfisdnkvedvrkdeyklppgyswyvcdvkdekdrse
iytlltdnyvedddnifrfnysaefllwaltspnylktwhigvkydasnkligfisaipt
dicihkrtikmaevnflcvhktlrskrlapvlikeitrrinleniwqaiytagvylpkpv
sdaryyhrsinvkklieigfsslnsrltmsraiklyrvedtlniknmrlmkkkdvegvhk
llgsyleqfnlyavftkeeiahwflpienviytyvneengkikdmisfyslpsqilgndk
ystlnaaysfynvtttatfkqlmqdaillakrnnfdvfnalevmqnksvfedlkfgegdg
slkyylynwkcasfapahvgivll

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2yncB (B:)
dykfwytqpvpkindefnesvnepfisdnkvedvrkdeyklppgyswyvcdvkdekdrse
iytlltdnyvedddnifrfnysaefllwaltspnylktwhigvkydasnkligfisaipt
dicihkrtikmaevnflcvhktlrskrlapvlikeitrrinleniwqaiytagvylpkpv
sdaryyhrsinvkklieigfsslnsrltmsraiklyrvedtlniknmrlmkkkdvegvhk
llgsyleqfnlyavftkeeiahwflpienviytyvneengkikdmisfyslpsqilgndk
ystlnaaysfynvtttatfkqlmqdaillakrnnfdvfnalevmqnksvfedlkfgegdg
slkyylynwkcasfapahvgivll

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2yncC (C:)
dykfwytqpvpkindefnesvnepfisdnkvedvrkdeyklppgyswyvcdvkdekdrse
iytlltdnyvedddnifrfnysaefllwaltspnylktwhigvkydasnkligfisaipt
dicihkrtikmaevnflcvhktlrskrlapvlikeitrrinleniwqaiytagvylpkpv
sdaryyhrsinvkklieigfsslnsrltmsraiklykvedtlniknmrlmkkkdvegvhk
llgsyleqfnlyavftkeeiahwflpienviytyvneengkikdmisfyslpsqilgndk
ystlnaaysfynvtttatfkqlmqdaillakrnnfdvfnalevmqnksvfedlkfgegdg
slkyylynwkcasfapahvgivll

    Sequence, based on observed residues (ATOM records): (download) 
    >2yncC (C:)
dykfwytqpvpkindefnesvnepfisdnkvedvrkdeyklppgyswyvcdvkdekdrse
iytlltdnyvedddnifrfnysaefllwaltspnylktwhigvkydasnkligfisaipt
dicihkrtikmaevnflcvhktlrskrlapvlikeitrrinleniwqaiytagvylpkpv
sdaryyhrsinvkklieigflykvedtlniknmrlmkkkdvegvhkllgsyleqfnlyav
ftkeeiahwflpienviytyvneengkikdmisfyslpsqilgndkystlnaaysfynvt
ttatfkqlmqdaillakrnnfdvfnalevmqnksvfedlkfgegdgslkyylynwkcasf
apahvgivll