PDB entry 2ymm

View 2ymm on RCSB PDB site
Description: Sulfate bound L-haloacid dehalogenase from a Rhodobacteraceae family bacterium
Deposited on 2012-10-09, released 2013-05-01
The last revision was dated 2013-05-01, with a file datestamp of 2013-04-26.
Experiment type: XRAY
Resolution: 1.64 Å
R-factor: 0.1651
AEROSPACI score: 0.6 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: l-haloacid dehalogenase
    Species: RHODOBACTERACEAE [TaxId:31989]
    Database cross-references and differences (RAF-indexed):
    • PDB 2YMM (Start-235)
  • Chain 'B':
    Compound: l-haloacid dehalogenase
    Species: RHODOBACTERACEAE [TaxId:31989]
    Database cross-references and differences (RAF-indexed):
    • PDB 2YMM (Start-235)
  • Chain 'C':
    Compound: l-haloacid dehalogenase
    Species: RHODOBACTERACEAE [TaxId:31989]
    Database cross-references and differences (RAF-indexed):
    • PDB 2YMM (Start-235)
  • Chain 'D':
    Compound: l-haloacid dehalogenase
    Species: RHODOBACTERACEAE [TaxId:31989]
    Database cross-references and differences (RAF-indexed):
    • PDB 2YMM (Start-235)
  • Heterogens: SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2ymmA (A:)
    mtpshparpsrsgilvfdvnetlldltslsplfervfgdakvlrewfpelilysqtltlt
    glyrpfgeiaaavfemvaanhqakvtpddiaelktrltsmpaypdvapaltrlqdagfrl
    vtltnsapspapsplekagiasffeahltvhssqrfkphpsvydstaetlgakpeelcmi
    achiwdtigaqargwrggfvarphntpltlaevpqpdfigrdmgeladqliaslta
    

    Sequence, based on observed residues (ATOM records):
    >2ymmA (A:)
    sgilvfdvnetlldltslsplfervfgdakvlrewfpelilysqtltltglyrpfgeiaa
    avfemvaanhqakvtpddiaelktrltsmpaypdvapaltrlqdagfrlvtltnsapspa
    psplekagiasffeahltvhssqrfkphpsvydstaetlgakpeelcmiachiwdtigaq
    argwrggfvarphntpltlaevpqpdfigrdmgeladqliaslta
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2ymmB (B:)
    mtpshparpsrsgilvfdvnetlldltslsplfervfgdakvlrewfpelilysqtltlt
    glyrpfgeiaaavfemvaanhqakvtpddiaelktrltsmpaypdvapaltrlqdagfrl
    vtltnsapspapsplekagiasffeahltvhssqrfkphpsvydstaetlgakpeelcmi
    achiwdtigaqargwrggfvarphntpltlaevpqpdfigrdmgeladqliaslta
    

    Sequence, based on observed residues (ATOM records):
    >2ymmB (B:)
    psrsgilvfdvnetlldltslsplfervfgdakvlrewfpelilysqtltltglyrpfge
    iaaavfemvaanhqakvtpddiaelktrltsmpaypdvapaltrlqdagfrlvtltnsap
    spapsplekagiasffeahltvhssqrfkphpsvydstaetlgakpeelcmiachiwdti
    gaqargwrggfvarphntpltlaevpqpdfigrdmgeladqliaslta
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2ymmC (C:)
    mtpshparpsrsgilvfdvnetlldltslsplfervfgdakvlrewfpelilysqtltlt
    glyrpfgeiaaavfemvaanhqakvtpddiaelktrltsmpaypdvapaltrlqdagfrl
    vtltnsapspapsplekagiasffeahltvhssqrfkphpsvydstaetlgakpeelcmi
    achiwdtigaqargwrggfvarphntpltlaevpqpdfigrdmgeladqliaslta
    

    Sequence, based on observed residues (ATOM records):
    >2ymmC (C:)
    sgilvfdvnetlldltslsplfervfgdakvlrewfpelilysqtltltglyrpfgeiaa
    avfemvaanhqakvtpddiaelktrltsmpaypdvapaltrlqdagfrlvtltnsapspa
    psplekagiasffeahltvhssqrfkphpsvydstaetlgakpeelcmiachiwdtigaq
    argwrggfvarphntpltlaevpqpdfigrdmgeladqliaslta
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2ymmD (D:)
    mtpshparpsrsgilvfdvnetlldltslsplfervfgdakvlrewfpelilysqtltlt
    glyrpfgeiaaavfemvaanhqakvtpddiaelktrltsmpaypdvapaltrlqdagfrl
    vtltnsapspapsplekagiasffeahltvhssqrfkphpsvydstaetlgakpeelcmi
    achiwdtigaqargwrggfvarphntpltlaevpqpdfigrdmgeladqliaslta
    

    Sequence, based on observed residues (ATOM records):
    >2ymmD (D:)
    sgilvfdvnetlldltslsplfervfgdakvlrewfpelilysqtltltglyrpfgeiaa
    avfemvaanhqakvtpddiaelktrltsmpaypdvapaltrlqdagfrlvtltnsapspa
    psplekagiasffeahltvhssqrfkphpsvydstaetlgakpeelcmiachiwdtigaq
    argwrggfvarphntpltlaevpqpdfigrdmgeladqliaslta