PDB entry 2yml

View 2yml on RCSB PDB site
Description: Native L-haloacid dehalogenase from a Rhodobacteraceae family bacterium
Deposited on 2012-10-09, released 2013-05-01
The last revision was dated 2013-05-01, with a file datestamp of 2013-04-26.
Experiment type: XRAY
Resolution: 1.79 Å
R-factor: 0.15981
AEROSPACI score: 0.55 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: l-haloacid dehalogenase
    Species: RHODOBACTERACEAE [TaxId:31989]
    Database cross-references and differences (RAF-indexed):
    • PDB 2YML (Start-235)
  • Chain 'B':
    Compound: l-haloacid dehalogenase
    Species: RHODOBACTERACEAE [TaxId:31989]
    Database cross-references and differences (RAF-indexed):
    • PDB 2YML
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2ymlA (A:)
mtpshparpsrsgilvfdvnetlldltslsplfervfgdakvlrewfpelilysqtltlt
glyrpfgeiaaavfemvaanhqakvtpddiaelktrltsmpaypdvapaltrlqdagfrl
vtltnsapspapsplekagiasffeahltvhssqrfkphpsvydstaetlgakpeelcmi
achiwdtigaqargwrggfvarphntpltlaevpqpdfigrdmgeladqliaslta

    Sequence, based on observed residues (ATOM records):
    >2ymlA (A:)
psrsgilvfdvnetlldltslsplfervfgdakvlrewfpelilysqtltltglyrpfge
iaaavfemvaanhqakvtpddiaelktrltsmpaypdvapaltrlqdagfrlvtltnsap
spapsplekagiasffeahltvhssqrfkphpsvydstaetlgakpeelcmiachiwdti
gaqargwrggfvarphntpltlaevpqpdfigrdmgeladqliaslta

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2ymlB (B:)
mtpshparpsrsgilvfdvnetlldltslsplfervfgdakvlrewfpelilysqtltlt
glyrpfgeiaaavfemvaanhqakvtpddiaelktrltsmpaypdvapaltrlqdagfrl
vtltnsapspapsplekagiasffeahltvhssqrfkphpsvydstaetlgakpeelcmi
achiwdtigaqargwrggfvarphntpltlaevpqpdfigrdmgeladqliaslta

    Sequence, based on observed residues (ATOM records):
    >2ymlB (B:)
rsgilvfdvnetlldltslsplfervfgdakvlrewfpelilysqtltltglyrpfgeia
aavfemvaanhqakvtpddiaelktrltsmpaypdvapaltrlqdagfrlvtltnsapsp
apsplekagiasffeahltvhssqrfkphpsvydstaetlgakpeelcmiachiwdtiga
qargwrggfvarphntpltlaevpqpdfigrdmgeladqliasl