PDB entry 2ymk

View 2ymk on RCSB PDB site
Description: Crystal structure of the hexameric anti-microbial peptide channel dermcidin
Deposited on 2012-10-09, released 2012-10-17
The last revision was dated 2013-12-25, with a file datestamp of 2013-12-20.
Experiment type: XRAY
Resolution: 2.49 Å
R-factor: 0.20838
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: dcd-1
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: dcd-1
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: dcd-1
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2ymkA (A:)
ssllekgldgakkavgglgklgkdavedlesvgkgavhdvkdvldsvl

    Sequence, based on observed residues (ATOM records):
    >2ymkA (A:)
llekgldgakkavgglgklgkdavedlesvgkgavhdvkdvldsvl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2ymkB (B:)
ssllekgldgakkavgglgklgkdavedlesvgkgavhdvkdvldsvl

    Sequence, based on observed residues (ATOM records):
    >2ymkB (B:)
sllekgldgakkavgglgklgkdavedlesvgkgavhdvkdvldsvl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2ymkC (C:)
ssllekgldgakkavgglgklgkdavedlesvgkgavhdvkdvldsvl

    Sequence, based on observed residues (ATOM records):
    >2ymkC (C:)
sllekgldgakkavgglgklgkdavedlesvgkgavhdvkdvldsvl