PDB entry 2ym9

View 2ym9 on RCSB PDB site
Description: SipD from Salmonella typhimurium
Class: cell invasion
Keywords: cell invasion, type 3 secretion, t3ss, needle tip protein, host pathogen interaction, bacterial pathogenesis, tip complex
Deposited on 2011-06-06, released 2011-08-17
The last revision prior to the SCOPe 2.04 freeze date was dated 2012-03-28, with a file datestamp of 2012-03-23.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.229
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cell invasion protein sipD
    Species: Salmonella enterica subsp. enterica serovar Typhimurium [TaxId:216597]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Cell invasion protein sipD
    Species: Salmonella enterica subsp. enterica serovar Typhimurium [TaxId:216597]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Cell invasion protein sipD
    Species: Salmonella enterica subsp. enterica serovar Typhimurium [TaxId:216597]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2ym9c_
  • Chain 'D':
    Compound: Cell invasion protein sipD
    Species: Salmonella enterica subsp. enterica serovar Typhimurium [TaxId:216597]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SO4, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2ym9C (C:)
    gshmlniqnysasphpgivaerpqtpsasehvetavvpsttehrgtdiislsqaatkihq
    aqqtlqstppiseenndertlarqqltsslnalaksgvslsaeqnenlrsafsaptsalf
    saspmaqprttisdaeiwdmvsqnisaigdsylgvyenvvavytdfyqafsdilskmggw
    llpgkdgntvkldvtslkndlnslvnkynqinsntvlfpaqsgsgvkvateaearqwlse
    lnlpnsclksygsgyvvtvdltplqkmvqdidglgapgkdsklemdnakyqawqsgfkaq
    eenmkttlqtltqkysnanslydnlvkvlsstisssletaksflqg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ym9C (C:)
    tisdaeiwdmvsqnisaigdsylgvyenvvavytdfyqafsdilskmggwllpgkdgntv
    kldvtslkndlnslvnkynqinsntvlfpaqsgsgvkvateaearqwlselnlpnsclks
    ygsgyvvtvdltplqkmvqdidglgapgkdsklemdnakyqawqsgfkaqeenmkttlqt
    ltqkysnanslydnlvkvlsstisssletaksflqg
    

  • Chain 'D':
    No sequence available.