PDB entry 2ym0

View 2ym0 on RCSB PDB site
Description: Truncated SipD from Salmonella typhimurium
Class: cell invasion
Keywords: cell invasion, type 3 secretion, t3ss, needle tip protein, host pathogen interaction, bacterial pathogenesis, tip complex
Deposited on 2011-06-06, released 2011-08-17
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-03-28, with a file datestamp of 2012-03-23.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.198
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cell invasion protein sipD
    Species: Salmonella enterica subsp. enterica serovar Typhimurium [TaxId:216597]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q56026 (21-End)
      • expression tag (20)
    Domains in SCOPe 2.06: d2ym0a1, d2ym0a2
  • Chain 'B':
    Compound: Cell invasion protein sipD
    Species: Salmonella enterica subsp. enterica serovar Typhimurium [TaxId:216597]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q56026 (21-End)
      • expression tag (20)
    Domains in SCOPe 2.06: d2ym0b1, d2ym0b2
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2ym0A (A:)
mgsshhhhhhssglvprgshmaeiwdmvsqnisaigdsylgvyenvvavytdfyqafsdi
lskmggwllpgkdgntvkldvtslkndlnslvnkynqinsntvlfpaqsgsgvkvateae
arqwlselnlpnsclksygsgyvvtvdltplqkmvqdidglgapgkdsklemdnakyqaw
qsgfkaqeenmkttlqtltqkysnanslydnlvkvlsstisssletaksflqg

    Sequence, based on observed residues (ATOM records): (download) 
    >2ym0A (A:)
maeiwdmvsqnisaigdsylgvyenvvavytdfyqafsdilskmggwllpgkdgntvkld
vtslkndlnslvnkynqinsntvlfpaqsgsgvkvateaearqwlselnlpnsclksygs
gyvvtvdltplqkmvqdidglgapgkdsklemdnakyqawqsgfkaqeenmkttlqtltq
kysnanslydnlvkvlsst

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2ym0B (B:)
mgsshhhhhhssglvprgshmaeiwdmvsqnisaigdsylgvyenvvavytdfyqafsdi
lskmggwllpgkdgntvkldvtslkndlnslvnkynqinsntvlfpaqsgsgvkvateae
arqwlselnlpnsclksygsgyvvtvdltplqkmvqdidglgapgkdsklemdnakyqaw
qsgfkaqeenmkttlqtltqkysnanslydnlvkvlsstisssletaksflqg

    Sequence, based on observed residues (ATOM records): (download) 
    >2ym0B (B:)
maeiwdmvsqnisaigdsylgvyenvvavytdfyqafsdilskmggwllpgkdgntvkld
vtslkndlnslvnkynqinsntvlfpaqsgsgvkvateaearqwlselnlpnsclksygs
gyvvtvdltplqkmvqdidglgapgkdsklemdnakyqawqsgfkaqeenmkttlqtltq
kysnanslydnlvkvlssti