PDB entry 2yl5

View 2yl5 on RCSB PDB site
Description: inhibition of the pneumococcal virulence factor strh and molecular insights into n-glycan recognition and hydrolysis
Deposited on 2011-05-31, released 2011-09-14
The last revision was dated 2011-11-23, with a file datestamp of 2011-11-18.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.23979
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: beta-n-acetylhexosaminidase
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:170187]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P49610 (4-End)
      • expression tag (2-3)
  • Chain 'B':
    Compound: beta-n-acetylhexosaminidase
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:170187]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P49610 (4-End)
      • expression tag (0-3)
  • Chain 'C':
    Compound: beta-n-acetylhexosaminidase
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:170187]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P49610 (4-End)
      • expression tag (0-3)
  • Chain 'D':
    Compound: beta-n-acetylhexosaminidase
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:170187]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P49610 (4-End)
      • expression tag (2-3)
  • Heterogens: MG, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2yl5A (A:)
gshmeklaknkvisidagrkyftlnqlkrivdkaselgysdvhlllgndglrfllddmti
tangktyasddvkkaiiegtkayyddpngtaltqaevtelieyakskdiglipainspgh
mdamlvameklgiknpqahfdkvskttmdlkneeamnfvkaligkymdffagktkifnfg
tdeyandatsaqgwyylkwyqlygkfaeyantlaamakerglqpmafndgfyyedkddvq
fdkdvlisywskgwwgynlaspqylaskgykflntngdwyyilgqkpedgggflkkaien
tgktpfnqlastkypevdlptvgsmlsiwadrpsaeykeeeifelmtafadhnkdyfran
ynalreelakiptnlegyskeslealdaaktalnynlnrnkqaeldtlvanlkaalqglk
pavthsgsldenevaanvetrp

    Sequence, based on observed residues (ATOM records):
    >2yl5A (A:)
hmeklaknkvisidagrkyftlnqlkrivdkaselgysdvhlllgndglrfllddmtita
ngktyasddvkkaiiegtkayyddpngtaltqaevtelieyakskdiglipainspghmd
amlvameklgiknpqahfdkvskttmdlkneeamnfvkaligkymdffagktkifnfgtd
eyandatsaqgwyylkwyqlygkfaeyantlaamakerglqpmafndgfyyedkddvqfd
kdvlisywskgwwgynlaspqylaskgykflntngdwyyilgqkpedgggflkkaientg
ktpfnqlastkypevdlptvgsmlsiwadrpsaeykeeeifelmtafadhnkdyfranyn
alreelakikeslealdaaktalnynlnrnkqaeldtlvanlkaalqgl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2yl5B (B:)
gshmeklaknkvisidagrkyftlnqlkrivdkaselgysdvhlllgndglrfllddmti
tangktyasddvkkaiiegtkayyddpngtaltqaevtelieyakskdiglipainspgh
mdamlvameklgiknpqahfdkvskttmdlkneeamnfvkaligkymdffagktkifnfg
tdeyandatsaqgwyylkwyqlygkfaeyantlaamakerglqpmafndgfyyedkddvq
fdkdvlisywskgwwgynlaspqylaskgykflntngdwyyilgqkpedgggflkkaien
tgktpfnqlastkypevdlptvgsmlsiwadrpsaeykeeeifelmtafadhnkdyfran
ynalreelakiptnlegyskeslealdaaktalnynlnrnkqaeldtlvanlkaalqglk
pavthsgsldenevaanvetrp

    Sequence, based on observed residues (ATOM records):
    >2yl5B (B:)
gshmeklaknkvisidagrkyftlnqlkrivdkaselgysdvhlllgndglrfllddmti
tangktyasddvkkaiiegtkayyddpngtaltqaevtelieyakskdiglipainspgh
mdamlvameklgiknpqahfdkvskttmdlkneeamnfvkaligkymdffagktkifnfg
tdeyandatsaqgwyylkwyqlygkfaeyantlaamakerglqpmafndgfyyedkddvq
fdkdvlisywskgwwgynlaspqylaskgykflntngdwyyilgqkpedgggflkkaien
tgktpfnqlastkypevdlptvgsmlsiwadrpsaeykeeeifelmtafadhnkdyfran
ynalreelakiptskeslealdaaktalnynlnrnkqaeldtlvanlkaalqg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2yl5C (C:)
gshmeklaknkvisidagrkyftlnqlkrivdkaselgysdvhlllgndglrfllddmti
tangktyasddvkkaiiegtkayyddpngtaltqaevtelieyakskdiglipainspgh
mdamlvameklgiknpqahfdkvskttmdlkneeamnfvkaligkymdffagktkifnfg
tdeyandatsaqgwyylkwyqlygkfaeyantlaamakerglqpmafndgfyyedkddvq
fdkdvlisywskgwwgynlaspqylaskgykflntngdwyyilgqkpedgggflkkaien
tgktpfnqlastkypevdlptvgsmlsiwadrpsaeykeeeifelmtafadhnkdyfran
ynalreelakiptnlegyskeslealdaaktalnynlnrnkqaeldtlvanlkaalqglk
pavthsgsldenevaanvetrp

    Sequence, based on observed residues (ATOM records):
    >2yl5C (C:)
gshmeklaknkvisidagrkyftlnqlkrivdkaselgysdvhlllgndglrfllddmti
tangktyasddvkkaiiegtkayyddpngtaltqaevtelieyakskdiglipainspgh
mdamlvameklgiknpqahfdkvskttmdlkneeamnfvkaligkymdffagktkifnfg
tdeyandatsaqgwyylkwyqlygkfaeyantlaamakerglqpmafndgfyyedkddvq
fdkdvlisywskgwwgynlaspqylaskgykflntngdwyyilgqkpedgggflkkaien
tgktpfnqlastkypevdlptvgsmlsiwadrpsaeykeeeifelmtafadhnkdyfran
ynalreelakipgyskeslealdaaktalnynlnrnkqaeldtlvanlkaalqg

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2yl5D (D:)
gshmeklaknkvisidagrkyftlnqlkrivdkaselgysdvhlllgndglrfllddmti
tangktyasddvkkaiiegtkayyddpngtaltqaevtelieyakskdiglipainspgh
mdamlvameklgiknpqahfdkvskttmdlkneeamnfvkaligkymdffagktkifnfg
tdeyandatsaqgwyylkwyqlygkfaeyantlaamakerglqpmafndgfyyedkddvq
fdkdvlisywskgwwgynlaspqylaskgykflntngdwyyilgqkpedgggflkkaien
tgktpfnqlastkypevdlptvgsmlsiwadrpsaeykeeeifelmtafadhnkdyfran
ynalreelakiptnlegyskeslealdaaktalnynlnrnkqaeldtlvanlkaalqglk
pavthsgsldenevaanvetrp

    Sequence, based on observed residues (ATOM records):
    >2yl5D (D:)
hmeklaknkvisidagrkyftlnqlkrivdkaselgysdvhlllgndglrfllddmtita
ngktyasddvkkaiiegtkayyddpngtaltqaevtelieyakskdiglipainspghmd
amlvameklgiknpqahfdkvskttmdlkneeamnfvkaligkymdffagktkifnfgtd
eyandatsaqgwyylkwyqlygkfaeyantlaamakerglqpmafndgfyyedkddvqfd
kdvlisywskgwwgynlaspqylaskgykflntngdwyyilgqkpedgggflkkaientg
ktpfnqlastkypevdlptvgsmlsiwadrpsaeykeeeifelmtafadhnkdyfranyn
alreelakiskeslealdaaktalnynlnrnkqaeldtlvanlkaalq