PDB entry 2ykp

View 2ykp on RCSB PDB site
Description: structure of the human line-1 orf1p trimer
Deposited on 2011-05-28, released 2011-08-10
The last revision was dated 2011-09-14, with a file datestamp of 2011-09-09.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.2275
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: line-1 orf1p
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q15605
      • engineered mutation (17)
      • engineered mutation (21)
      • engineered mutation (24)
  • Chain 'B':
    Compound: line-1 orf1p
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q15605
      • engineered mutation (17)
      • engineered mutation (21)
      • engineered mutation (24)
  • Chain 'C':
    Compound: line-1 orf1p
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q15605
      • engineered mutation (17)
      • engineered mutation (21)
      • engineered mutation (24)
  • Heterogens: CL

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2ykpA (A:)
maslrsrcdqleervsaaedeineikregkfrekrikrneqslqeiwdyvkrpnlrligv
pesdvengtklentlqdiiqenfpnlarqanvqiqeiqrtpqryssrratprhiivrftk
vemkekmlraarekgrvtlkgkpirltvdlsaetlqarrewgpifnilkeknfqprisyp
aklsfisegeikyfidkqmlrdfvttrpalkellkealnmernhhhhhh

    Sequence, based on observed residues (ATOM records):
    >2ykpA (A:)
rcdqleervsaaedeineikregkfrekrikrneqslqeiwdyvkrpnlrligvpesdve
ngtklentlqdiiqenfpnlvqiqeiqrtpratprhiivrftkvemkekmlraarekgrv
tlkgkpirltvdlsaetlqarrewgpifnilkeknfqprisypaklsfisegeikyfidk
qmlrdfvttrpalkellkealnm

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2ykpB (B:)
maslrsrcdqleervsaaedeineikregkfrekrikrneqslqeiwdyvkrpnlrligv
pesdvengtklentlqdiiqenfpnlarqanvqiqeiqrtpqryssrratprhiivrftk
vemkekmlraarekgrvtlkgkpirltvdlsaetlqarrewgpifnilkeknfqprisyp
aklsfisegeikyfidkqmlrdfvttrpalkellkealnmernhhhhhh

    Sequence, based on observed residues (ATOM records):
    >2ykpB (B:)
lrsrcdqleervsaaedeineikregkfrekrikrneqslqeiwdyvkrpnlrligvpes
dvengtklentlqdiiqenfvqiqeiqrttprhiivrftkvemkekmlraarekgrvtlk
gkpirltvdlsaetlqarrewgpifnilkeknfqprisypaklsfisegeikyfidkqml
rdfvttrpalkellkealnm

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2ykpC (C:)
maslrsrcdqleervsaaedeineikregkfrekrikrneqslqeiwdyvkrpnlrligv
pesdvengtklentlqdiiqenfpnlarqanvqiqeiqrtpqryssrratprhiivrftk
vemkekmlraarekgrvtlkgkpirltvdlsaetlqarrewgpifnilkeknfqprisyp
aklsfisegeikyfidkqmlrdfvttrpalkellkealnmernhhhhhh

    Sequence, based on observed residues (ATOM records):
    >2ykpC (C:)
srcdqleervsaaedeineikregkfrekrikrneqslqeiwdyvkrpnlrligvpeeng
tklentlqdiiqenfpvqiqeiqrtatprhiivrftkvemkekmlraarekgrvtlkgkp
irltvdlsaetlqarrewgpifnilkeknfqprisypaklsfisegeikyfidkqmlrdf
vttrpalkellkealnm