PDB entry 2yko

View 2yko on RCSB PDB site
Description: Structure of the human LINE-1 ORF1p trimer
Deposited on 2011-05-28, released 2011-08-10
The last revision was dated 2012-10-10, with a file datestamp of 2012-10-05.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.2109
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: line-1 orf1p
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q15605
      • engineered mutation (17)
      • engineered mutation (21)
      • engineered mutation (24)
  • Chain 'B':
    Compound: line-1 orf1p
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q15605
      • engineered mutation (17)
      • engineered mutation (21)
      • engineered mutation (24)
  • Chain 'C':
    Compound: line-1 orf1p
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q15605
      • engineered mutation (17)
      • engineered mutation (21)
      • engineered mutation (24)
  • Heterogens: CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2ykoA (A:)
maslrsrcdqleervsaaedeineikregkfrekrikrneqslqeiwdyvkrpnlrligv
pesdvengtklentlqdiiqenfpnlarqanvqiqeiqrtpqryssrratprhiivrftk
vemkekmlraarekgrvtlkgkpirltvdlsaetlqarrewgpifnilkeknfqprisyp
aklsfisegeikyfidkqmlrdfvttrpalkellkealnmernnryqhhhhhh

    Sequence, based on observed residues (ATOM records):
    >2ykoA (A:)
rcdqleervsaaedeineikregkfrekrikrneqslqeiwdyvkrpnlrligvpesdve
ngtklentlqdiiqenfpnlanvqiqeiqrtratprhiivrftkvemkekmlraarekgr
vtlkgkpirltvdlsaetlqarrewgpifnilkeknfqprisypaklsfisegeikyfid
kqmlrdfvttrpalkellkealnm

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2ykoB (B:)
maslrsrcdqleervsaaedeineikregkfrekrikrneqslqeiwdyvkrpnlrligv
pesdvengtklentlqdiiqenfpnlarqanvqiqeiqrtpqryssrratprhiivrftk
vemkekmlraarekgrvtlkgkpirltvdlsaetlqarrewgpifnilkeknfqprisyp
aklsfisegeikyfidkqmlrdfvttrpalkellkealnmernnryqhhhhhh

    Sequence, based on observed residues (ATOM records):
    >2ykoB (B:)
leervsaaedeineikregkfrekrikrneqslqeiwdyvkrpnlrligvpestklentl
qdiiqenfpnlvqiqeiqrtratprhiivrftkvemkekmlraarekgrvtlkgkpirlt
vdlsaetlqarrewgpifnilkeknfqprisypaklsfisegeikyfidkqmlrdfvttr
palkellkealnm

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2ykoC (C:)
maslrsrcdqleervsaaedeineikregkfrekrikrneqslqeiwdyvkrpnlrligv
pesdvengtklentlqdiiqenfpnlarqanvqiqeiqrtpqryssrratprhiivrftk
vemkekmlraarekgrvtlkgkpirltvdlsaetlqarrewgpifnilkeknfqprisyp
aklsfisegeikyfidkqmlrdfvttrpalkellkealnmernnryqhhhhhh

    Sequence, based on observed residues (ATOM records):
    >2ykoC (C:)
qleervsaaedeineikregkfrekrikrneqslqeiwdyvkrpnlrligvpesdvengt
klentlqdiiqenfpnlarqanvqiqeiqrtprhiivrftkvemkekmlraarekgrvtl
kgkpirltvdlsaetlqarrewgpifnilkeknfqprisypaklsfisegeikyfidkqm
lrdfvttrpalkellkealnm