PDB entry 2ykg

View 2ykg on RCSB PDB site
Description: structural insights into rna recognition by rig-i
Deposited on 2011-05-27, released 2011-10-26
The last revision was dated 2011-10-26, with a file datestamp of 2011-10-21.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.223
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Probable ATP-dependent RNA helicase DDX58
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O95786
      • conflict (76)
      • conflict (189)
      • conflict (598)
  • Chain 'C':
    Compound: 5'-r(*gp*cp*gp*cp*gp*cp*gp*cp*gp*cp)-3'
    Species: Homo sapiens [TaxId:9606]
  • Chain 'D':
    Compound: 5'-r(*gp*cp*gp*cp*gp*cp*gp*cp*gp*cp)-3'
    Species: Homo sapiens [TaxId:9606]
  • Heterogens: ZN, SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2ykgA (A:)
sevsdtnlyspfkprnyqlelalpamkgkntiicaptgcgktfvsllicehhlkkfpqgq
kgkvvffanqipvyeqnksvfskyferhgyrvtgisgataenvpveqivenndiiiltpq
ilvnnlkkgtipslsiftlmifdechntskqhpynmimfnyldqklggssgplpqviglt
asvgvgdakttdealdyicklcasldasviatvkhnleeleqvvykpqkffrkvesrisd
kfkyiiaqlmrdteslakrickdlenlsqiqnrefgtqkyeqwivtvqkacmvfqmpdkd
eesrickalflytshlrkyndaliiseharmkdaldylkdffsnvraagfdeieqdltqr
feeklqelesvsrdpsnenpkledlcfilqeeyhlnpetitilfvktralvdalknwieg
npklsflkpgiltgrgktnqntgmtlpaqkcildafkasgdhniliatsvadegidiaqc
nlvilyeyvgnvikmiqtrgrgrargskcflltsnagviekeqinmykekmmndsilrlq
twdeavfrekilhiqthekfirdsqekpkpvpdkenkkllcrkckalacytadvrviedc
hytvlgdafkecfvsrphpkpkqfssfekrakifcarqncshdwgihvkyktfeipviki
esfvvediatgvqtlyskwkdfhfekipfdpaemsk

    Sequence, based on observed residues (ATOM records):
    >2ykgA (A:)
nlyskprnyqlelalpamkgkntiicaptgcgktfvsllicehhlkkfpqgqkgkvvffa
nqipvyeqnksvfskyferhgyrvtgisgataenvpveqivenndiiiltpqilvnnlkk
gtipslsiftlmifdechntskqhpynmimfnyldqklggssgplpqvigltasvgvgda
kttdealdyicklcasldasviatvkhnleeleqvvykpqkffrkvesrisdkfkyiiaq
lmrdteslakrickdlenlsqiqnrefgtqkyeqwivtvqkacmvdeesrickalflyts
hlrkyndaliiseharmkdaldylkdffsnvraagfdeieqdltqrfeeklqelesvsrd
psnenpkledlcfilqeeyhlnpetitilfvktralvdalknwiegnpklsflkpgidhn
iliatsvadegaqcnlvilyeyvvikmrgskcflltsnagviekeqinmykekmmndsil
rlqtwdeavfrekilhiqthekfirdsqekpkpvpdkenkkllcrkckalacytadvrvi
edchytvlgdafkecfvsrphpkpkqfssfekrakifcarqncshdwgihvkyktfeipv
ikiesfvvediatgvqtlyskwkdfhfekipfdpae

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.