PDB entry 2yjf

View 2yjf on RCSB PDB site
Description: oligomeric assembly of actin bound to mrtf-a
Deposited on 2011-05-19, released 2011-07-06
The last revision was dated 2018-04-11, with a file datestamp of 2018-04-06.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Actin, alpha skeletal muscle
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Actin, alpha skeletal muscle
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Actin, alpha skeletal muscle
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Actin, alpha skeletal muscle
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Actin, alpha skeletal muscle
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: mkl/myocardin-like protein 1
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8K4J6 (10-End)
      • expression tag (0-9)
      • conflict (44)
      • engineered mutation (108-109)
  • Heterogens: LAB, ATP, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2yjfA (A:)
    mcdedettalvcdngsglvkagfagddapravfpsivgrprhqgvmvgmgqkdsyvgdea
    qskrgiltlkypiehgiitnwddmekiwhhtfynelrvapeehptllteaplnpkanrek
    mtqimfetfnvpamyvaiqavlslyasgrttgivldsgdgvthnvpiyegyalphaimrl
    dlagrdltdylmkiltergysfvttaereivrdikeklcyvaldfenemataasssslek
    syelpdgqvitignerfrcpetlfqpsfigmesagihettynsimkcdidirkdlyannv
    msggttmypgiadrmqkeitalapstmkikiiapperkysvwiggsilaslstfqqmwit
    kqeydeagpsivhrkcf
    

    Sequence, based on observed residues (ATOM records):
    >2yjfA (A:)
    ttalvcdngsglvkagfagddapravfpsivkdsyvgdeaqskrkypiehgiitnwddme
    kiwhhtfynelrvapeehptllteaplnpkanrekmtqimfetfnvpamyvaiqavlsly
    asgrttgivldsgdgvthnvpiyegyalphaimrldlagrdltdylmkiltergysfvtt
    aereivrdikeklcyvaldfenemataassssleksyelpdgqvitignerfrcpetlfq
    psfigmesagihettynsimkcdidirkdlyannvmsggttmypgiadrmqkeitalaps
    tmkikiiapperkysvwiggsilaslstfqqmwitkqeydeagpsivhrkcf
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2yjfB (B:)
    mcdedettalvcdngsglvkagfagddapravfpsivgrprhqgvmvgmgqkdsyvgdea
    qskrgiltlkypiehgiitnwddmekiwhhtfynelrvapeehptllteaplnpkanrek
    mtqimfetfnvpamyvaiqavlslyasgrttgivldsgdgvthnvpiyegyalphaimrl
    dlagrdltdylmkiltergysfvttaereivrdikeklcyvaldfenemataasssslek
    syelpdgqvitignerfrcpetlfqpsfigmesagihettynsimkcdidirkdlyannv
    msggttmypgiadrmqkeitalapstmkikiiapperkysvwiggsilaslstfqqmwit
    kqeydeagpsivhrkcf
    

    Sequence, based on observed residues (ATOM records):
    >2yjfB (B:)
    ttalvcdngsglvkagfagddapravfpypiehgiitnwddmekiwhhtfynelrvapee
    hptllteaplnpkanrekmtqimfetfnvpamyvaiqavlslyasgrttgivldsgdgvt
    hnvpiyegyalphaimrldlagrdltdylmkiltergysfvttaereivrdikeklcyva
    ldfenemataassssleksyelpdgqvitignerfrcpetlfqpsfigmesagihettyn
    simkcdidirkdlyannvmsggttmypgiadrmqkeitalapstmkikiiapperkysvw
    iggsilaslstfqqmwitkqeydeagpsivhrkcf
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2yjfC (C:)
    mcdedettalvcdngsglvkagfagddapravfpsivgrprhqgvmvgmgqkdsyvgdea
    qskrgiltlkypiehgiitnwddmekiwhhtfynelrvapeehptllteaplnpkanrek
    mtqimfetfnvpamyvaiqavlslyasgrttgivldsgdgvthnvpiyegyalphaimrl
    dlagrdltdylmkiltergysfvttaereivrdikeklcyvaldfenemataasssslek
    syelpdgqvitignerfrcpetlfqpsfigmesagihettynsimkcdidirkdlyannv
    msggttmypgiadrmqkeitalapstmkikiiapperkysvwiggsilaslstfqqmwit
    kqeydeagpsivhrkcf
    

    Sequence, based on observed residues (ATOM records):
    >2yjfC (C:)
    talvcdngsglvkagfagddapravfpsvgdeaqskypiehgiitnwddmekiwhhtfyn
    elrvapeehptllteaplnpkanrekmtqimfetfnvpamyvaiqavlslyasgrttgiv
    ldsgdgvthnvpiyegyalphaimrldlagrdltdylmkiltergysfvttaereivrdi
    keklcyvaldfenemataassssleksyelpdgqvitignerfrcpetlfqpsfigmesa
    gihettynsimkcdidirkdlyannvmsggttmypgiadrmqkeitalapstmkikiiap
    perkysvwiggsilaslstfqqmwitkqeydeagpsivhrkcf
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2yjfD (D:)
    mcdedettalvcdngsglvkagfagddapravfpsivgrprhqgvmvgmgqkdsyvgdea
    qskrgiltlkypiehgiitnwddmekiwhhtfynelrvapeehptllteaplnpkanrek
    mtqimfetfnvpamyvaiqavlslyasgrttgivldsgdgvthnvpiyegyalphaimrl
    dlagrdltdylmkiltergysfvttaereivrdikeklcyvaldfenemataasssslek
    syelpdgqvitignerfrcpetlfqpsfigmesagihettynsimkcdidirkdlyannv
    msggttmypgiadrmqkeitalapstmkikiiapperkysvwiggsilaslstfqqmwit
    kqeydeagpsivhrkcf
    

    Sequence, based on observed residues (ATOM records):
    >2yjfD (D:)
    ttalvcdngsglvkagfagddapravfpsivdsyvgdeiltlkypiehgiitnwddmeki
    whhtfynelrvapeehptllteaplnpkanrekmtqimfetfnvpamyvaiqavlslyas
    grttgivldsgdgvthnvpiyegyalphaimrldlagrdltdylmkiltergysfvttae
    reivrdikeklcyvaldfenemataleksyelpdgqvitignerfrcpetlfqpsfigme
    sagihettynsimkcdidirkdlyannvmsggttmypgiadrmqkeitalapstmkikii
    apperkysvwiggsilaslstfqqmwitkqeydeagpsivhrkcf
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2yjfE (E:)
    mcdedettalvcdngsglvkagfagddapravfpsivgrprhqgvmvgmgqkdsyvgdea
    qskrgiltlkypiehgiitnwddmekiwhhtfynelrvapeehptllteaplnpkanrek
    mtqimfetfnvpamyvaiqavlslyasgrttgivldsgdgvthnvpiyegyalphaimrl
    dlagrdltdylmkiltergysfvttaereivrdikeklcyvaldfenemataasssslek
    syelpdgqvitignerfrcpetlfqpsfigmesagihettynsimkcdidirkdlyannv
    msggttmypgiadrmqkeitalapstmkikiiapperkysvwiggsilaslstfqqmwit
    kqeydeagpsivhrkcf
    

    Sequence, based on observed residues (ATOM records):
    >2yjfE (E:)
    talvcdngsglvkagfagddapravfpiehgiitnwddmekiwhhtfynelrvapeehpt
    llteaplnpkanrekmtqimfetfnvpamyvaiqavlslyasgrttgivldsgdgvthnv
    piyegyalphaimrldlagrdltdylmkiltergysfvttaereivrdikeklcyvaldf
    enemataasssslektignerfrcpetlfqpsfigmesagihettynsimkcdidirkdl
    yannvmsggttmypgiadrmqkeitalapstmkikiiapperkysvwiggsilaslstfq
    qmwitkqeydeagpsivh
    

  • Chain 'M':
    Sequence, based on SEQRES records:
    >2yjfM (M:)
    apgslserknvlqlklqqrrtreelvsqgimpplkspaafheqreslerartedylkrki
    rsrperaelvrmhileetsaepslqakqlklkrarladdlnekiaqrpermelveknilp
    vesslkeaiivgqvnyp
    

    Sequence, based on observed residues (ATOM records):
    >2yjfM (M:)
    apgslserknvlqlklqqrrtreelvsqgimpplkspaafheqreslerartedylkrki
    rsrperaelvrmhileetsaepslqakqlklkrarladdlnekiaqrpermelveknilp
    v