PDB entry 2yiu

View 2yiu on RCSB PDB site
Description: x-ray structure of the dimeric cytochrome bc1 complex from the soil bacterium paracoccus denitrificans at 2.7 angstrom resolution
Deposited on 2011-05-16, released 2011-10-26
The last revision was dated 2011-11-23, with a file datestamp of 2011-11-18.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.24033
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cytochrome b
    Species: Paracoccus denitrificans [TaxId:318586]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: cytochrome c1, heme protein
    Species: Paracoccus denitrificans [TaxId:318586]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: ubiquinol-cytochrome c reductase iron-sulfur subunit
    Species: Paracoccus denitrificans [TaxId:318586]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: cytochrome b
    Species: Paracoccus denitrificans [TaxId:318586]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: cytochrome c1, heme protein
    Species: Paracoccus denitrificans [TaxId:318586]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: ubiquinol-cytochrome c reductase iron-sulfur subunit
    Species: Paracoccus denitrificans [TaxId:318586]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HEM, SMA, HEC, FES, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2yiuA (A:)
magiphdhyepktgferwlhrrlpivslvydtlmiptpknlnwwwiwgivlafclvlqia
tgivlvmhytphvdlafasvehimrdvnggymlrylhangaslfflavyihifrglyygs
ykaprevtwivgmliylmmmgtafmgyvlpwgqmsfwgatvitglfgaipgvgeaiqtwl
lggpavdnptlnrffslhyllpfviaalvvvhiwafhttgnnnptgvevrrgskeeakkd
tlpfwpyfvikdlfalavvlvvffaivgfmpnylghpdnyieanplvtpahivpewyflp
fyailraftadvwvvmlvnwlsfgiidakffgviamfgailvmalvpwldtsrvrsgqyr
plfkwwfwllavdfvvlmwvgampaegiypyialagsaywfayfliilpllgiiekpdam
pqtieedfnahygpethpaehhhhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >2yiuA (A:)
giphdhyepktgferwlhrrlpivslvydtlmiptpknlnwwwiwgivlafclvlqiatg
ivlvmhytphvdlafasvehimrdvnggymlrylhangaslfflavyihifrglyygsyk
aprevtwivgmliylmmmgtafmgyvlpwgqmsfwgatvitglfgaipgvgeaiqtwllg
gpavdnptlnrffslhyllpfviaalvvvhiwafhttgnnnptgvevrrgskeeakkdtl
pfwpyfvikdlfalavvlvvffaivgfmpnylghpdnyieanplvtpahivpewyflpfy
ailraftadvwvvmlvnwlsfgiidakffgviamfgailvmalvpwldtsrvrsgqyrpl
fkwwfwllavdfvvlmwvgampaegiypyialagsaywfayfliilpllgiiekpdampq
tieedfna

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2yiuB (B:)
qdastapgttapagaaqeagdshaaahiedisfsfegpfgkfdqhqlqrglqvytevcsa
chglryvplrtladeggpqlpedqvrayaanfditdpeteedrprvptdhfptvsgegmg
pdlslmakaragfhgpygtglsqlfngiggpeyihavltgydgeekeeagavlyhnaafa
gnwiqmaaplsddqvtyedgtpatvdqmatdvaaflmwtaepkmmdrkqvgfvsvifliv
laallyltnkklwqpikhprkpe

    Sequence, based on observed residues (ATOM records):
    >2yiuB (B:)
disfsfegpfgkfdqhqlqrglqvytevcsachglryvplrtladeggpqlpedqvraya
anfditdpeteedrprvptdhfptvsgegmgpdlslmakariggpeyihavltgydgeek
vlyhnaafagnwiqmaaplsddqvtyedgtpatvdqmatdvaaflmwtaepkmmdrkqvg
fvsviflivlaallyltnkklwqpik

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2yiuC (C:)
mshadehagdhgatrrdflyyatagagtvaagaaawtlvnqmnpsadvqalasiqvdvsg
vetgtqltvkwlgkpvfirrrtedeiqagrevdlgqlidrsaqnsnkpdapatdenrtmd
eagewlvmigvcthlgcvpigdgagdfggwfcpchgshydtsgrirrgpapqnlhipvae
flddttiklg

    Sequence, based on observed residues (ATOM records):
    >2yiuC (C:)
dflyyatagagtvaagaaawtlvnqmnpsadvqalasiqvdvsgvetgtqltvkwlgkpv
firrrtedeiqagrevdlgqlidrsaqnsnkpdapatdenrtmdeagewlvmigvcthlg
cvpigdgagdfggwfcpchgshydtsgrirrgpapqnlhipvaeflddttiklg

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2yiuD (D:)
magiphdhyepktgferwlhrrlpivslvydtlmiptpknlnwwwiwgivlafclvlqia
tgivlvmhytphvdlafasvehimrdvnggymlrylhangaslfflavyihifrglyygs
ykaprevtwivgmliylmmmgtafmgyvlpwgqmsfwgatvitglfgaipgvgeaiqtwl
lggpavdnptlnrffslhyllpfviaalvvvhiwafhttgnnnptgvevrrgskeeakkd
tlpfwpyfvikdlfalavvlvvffaivgfmpnylghpdnyieanplvtpahivpewyflp
fyailraftadvwvvmlvnwlsfgiidakffgviamfgailvmalvpwldtsrvrsgqyr
plfkwwfwllavdfvvlmwvgampaegiypyialagsaywfayfliilpllgiiekpdam
pqtieedfnahygpethpaehhhhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >2yiuD (D:)
giphdhyepktgferwlhrrlpivslvydtlmiptpknlnwwwiwgivlafclvlqiatg
ivlvmhytphvdlafasvehimrdvnggymlrylhangaslfflavyihifrglyygsyk
aprevtwivgmliylmmmgtafmgyvlpwgqmsfwgatvitglfgaipgvgeaiqtwllg
gpavdnptlnrffslhyllpfviaalvvvhiwafhttgnnnptgvevrrgskeeakkdtl
pfwpyfvikdlfalavvlvvffaivgfmpnylghpdnyieanplvtpahivpewyflpfy
ailraftadvwvvmlvnwlsfgiidakffgviamfgailvmalvpwldtsrvrsgqyrpl
fkwwfwllavdfvvlmwvgampaegiypyialagsaywfayfliilpllgiiekpdampq
tieedfna

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2yiuE (E:)
qdastapgttapagaaqeagdshaaahiedisfsfegpfgkfdqhqlqrglqvytevcsa
chglryvplrtladeggpqlpedqvrayaanfditdpeteedrprvptdhfptvsgegmg
pdlslmakaragfhgpygtglsqlfngiggpeyihavltgydgeekeeagavlyhnaafa
gnwiqmaaplsddqvtyedgtpatvdqmatdvaaflmwtaepkmmdrkqvgfvsvifliv
laallyltnkklwqpikhprkpe

    Sequence, based on observed residues (ATOM records):
    >2yiuE (E:)
disfsfegpfgkfdqhqlqrglqvytevcsachglryvplrtladeggpqlpedqvraya
anfditdpeteedrprvptdhfptvsgegmgpdlslmakariggpeyihavltgydgeek
vlyhnaafagnwiqmaaplsddqvtyedgtpatvdqmatdvaaflmwtaepkmmdrkqvg
fvsviflivlaallyltnkklwqpik

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2yiuF (F:)
mshadehagdhgatrrdflyyatagagtvaagaaawtlvnqmnpsadvqalasiqvdvsg
vetgtqltvkwlgkpvfirrrtedeiqagrevdlgqlidrsaqnsnkpdapatdenrtmd
eagewlvmigvcthlgcvpigdgagdfggwfcpchgshydtsgrirrgpapqnlhipvae
flddttiklg

    Sequence, based on observed residues (ATOM records):
    >2yiuF (F:)
dflyyatagagtvaagaaawtlvnqmnpsadvqalasiqvdvsgvetgtqltvkwlgkpv
firrrtedeiqagrevdlgqlidrsaqnsnkpdapatdenrtmdeagewlvmigvcthlg
cvpigdgagdfggwfcpchgshydtsgrirrgpapqnlhipvaeflddttiklg