PDB entry 2yip

View 2yip on RCSB PDB site
Description: crystal structure of parasite sarcocystis muris microneme protein sml- 2 in complex with 1-thio-beta-d-galactose (spacegroup p212121)
Deposited on 2011-05-16, released 2011-11-02
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.14 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: microneme antigen l2
    Species: SARCOCYSTIS MURIS [TaxId:5813]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: microneme antigen l2
    Species: SARCOCYSTIS MURIS [TaxId:5813]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: microneme antigen l2
    Species: SARCOCYSTIS MURIS [TaxId:5813]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: microneme antigen l2
    Species: SARCOCYSTIS MURIS [TaxId:5813]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: microneme antigen l2
    Species: SARCOCYSTIS MURIS [TaxId:5813]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: microneme antigen l2
    Species: SARCOCYSTIS MURIS [TaxId:5813]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: YIO, CL, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2yipA (A:)
    agpqldvscfahdknigsrteqlsvvhvasaqdcmkecqalptcshftynknskkchlka
    gapefytytgdmtgprscehncsdacwmdgnnplavwdysgqppalcwaacmgtpgcdly
    tfqgmtcklysqtsskra
    

    Sequence, based on observed residues (ATOM records):
    >2yipA (A:)
    qldvscfahdknigsrteqlsvvhvasaqdcmkecqalptcshftynknskkchlkagap
    efytytgdmtgprscehncsdacwmdgnnplavwdysgqppalcwaacmgtpgcdlytfq
    gmtcklysqts
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2yipB (B:)
    agpqldvscfahdknigsrteqlsvvhvasaqdcmkecqalptcshftynknskkchlka
    gapefytytgdmtgprscehncsdacwmdgnnplavwdysgqppalcwaacmgtpgcdly
    tfqgmtcklysqtsskra
    

    Sequence, based on observed residues (ATOM records):
    >2yipB (B:)
    qldvscfahdknigsrteqlsvvhvasaqdcmkecqalptcshftynknskkchlkagap
    efytytgdmtgprscehncsdacwmdgnnplavwdysgqppalcwaacmgtpgcdlytfq
    gmtcklysqts
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2yipC (C:)
    agpqldvscfahdknigsrteqlsvvhvasaqdcmkecqalptcshftynknskkchlka
    gapefytytgdmtgprscehncsdacwmdgnnplavwdysgqppalcwaacmgtpgcdly
    tfqgmtcklysqtsskra
    

    Sequence, based on observed residues (ATOM records):
    >2yipC (C:)
    qldvscfahdknigsrteqlsvvhvasaqdcmkecqalptcshftynknskkchlkagap
    efytytgdmtgprscehncsdacwmdgnnplavwdysgqppalcwaacmgtpgcdlytfq
    gmtcklysqts
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2yipD (D:)
    agpqldvscfahdknigsrteqlsvvhvasaqdcmkecqalptcshftynknskkchlka
    gapefytytgdmtgprscehncsdacwmdgnnplavwdysgqppalcwaacmgtpgcdly
    tfqgmtcklysqtsskra
    

    Sequence, based on observed residues (ATOM records):
    >2yipD (D:)
    ldvscfahdknigsrteqlsvvhvasaqdcmkecqalptcshftynknskkchlkagape
    fytytgdmtgprscehncsdacwmdgnnplavwdysgqppalcwaacmgtpgcdlytfqg
    mtcklysqts
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2yipE (E:)
    agpqldvscfahdknigsrteqlsvvhvasaqdcmkecqalptcshftynknskkchlka
    gapefytytgdmtgprscehncsdacwmdgnnplavwdysgqppalcwaacmgtpgcdly
    tfqgmtcklysqtsskra
    

    Sequence, based on observed residues (ATOM records):
    >2yipE (E:)
    qldvscfahdknigsrteqlsvvhvasaqdcmkecqalptcshftynknskkchlkagap
    efytytgdmtgprscehncsdacwmdgnnplavwdysgqppalcwaacmgtpgcdlytfq
    gmtcklysqts
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2yipF (F:)
    agpqldvscfahdknigsrteqlsvvhvasaqdcmkecqalptcshftynknskkchlka
    gapefytytgdmtgprscehncsdacwmdgnnplavwdysgqppalcwaacmgtpgcdly
    tfqgmtcklysqtsskra
    

    Sequence, based on observed residues (ATOM records):
    >2yipF (F:)
    qldvscfahdknigsrteqlsvvhvasaqdcmkecqalptcshftynknskkchlkagap
    efytytgdmtgprscehncsdacwmdgnnplavwdysgqppalcwaacmgtpgcdlytfq
    gmtcklysqts