PDB entry 2yib

View 2yib on RCSB PDB site
Description: structure of the rna polymerase vp1 from infectious pancreatic necrosis virus
Deposited on 2011-05-11, released 2011-07-20
The last revision was dated 2019-05-08, with a file datestamp of 2019-05-03.
Experiment type: XRAY
Resolution: 3.8 Å
R-factor: N/A
AEROSPACI score: 0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA-directed RNA polymerase
    Species: INFECTIOUS PANCREATIC NECROSIS VIRUS [TaxId:11002]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: RNA-directed RNA polymerase
    Species: INFECTIOUS PANCREATIC NECROSIS VIRUS [TaxId:11002]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: RNA-directed RNA polymerase
    Species: INFECTIOUS PANCREATIC NECROSIS VIRUS [TaxId:11002]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: RNA-directed RNA polymerase
    Species: INFECTIOUS PANCREATIC NECROSIS VIRUS [TaxId:11002]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22173 (Start-686)
    • PDB 2YIB (687-769)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2yibA (A:)
msdifnspqnkasiltalmksttgdvedvlipkrfrpakdpldspqaaaqflkdnkyril
rpraiptmveletdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtf
gapditllkqltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatg
rnpnktpktvgytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylph
vtikssaglpyigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscg
llfpkgerytqvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfsp
fhggmdrimtiirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammy
ylltrgwtnedgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnn
hlmstivvaewvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgy
ladgsdlppirpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalar
kpgaeiayqivryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnms
efggdlegitlsepltnqtlvdintpldsfdpkarpqtprspkktldevttaitsgtykd
pksavwrlldqrtklrvstlrdqalalkpasssvdnwaeateelaqqqqllmkannllks
sltetrealetiqsdkiiagksnpeknpgtaanpvvgygefsekipltptqkknakrrek
qrrnqvehhhhhh

    Sequence, based on observed residues (ATOM records):
    >2yibA (A:)
difnspqnkasiltalmedvlipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmv
eletdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllk
qltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpkt
vgytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylphvtikssagl
pyigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscgllfpkgery
tqvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfspfhggmdrim
tiirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammyylltrgwtn
edgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivva
ewvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgyladgsdlpp
irpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalarkpgaeiayq
ivryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegi
tlsepltnqtlvdintpldsfdpkarpqtprspkktldevttaitsgtykdpksavwrll
dqrtklrvstlrdqalalkpasssvdnwaeateelaqqqqllmkannllkssltetreal
etiqsdkii

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2yibB (B:)
msdifnspqnkasiltalmksttgdvedvlipkrfrpakdpldspqaaaqflkdnkyril
rpraiptmveletdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtf
gapditllkqltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatg
rnpnktpktvgytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylph
vtikssaglpyigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscg
llfpkgerytqvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfsp
fhggmdrimtiirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammy
ylltrgwtnedgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnn
hlmstivvaewvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgy
ladgsdlppirpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalar
kpgaeiayqivryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnms
efggdlegitlsepltnqtlvdintpldsfdpkarpqtprspkktldevttaitsgtykd
pksavwrlldqrtklrvstlrdqalalkpasssvdnwaeateelaqqqqllmkannllks
sltetrealetiqsdkiiagksnpeknpgtaanpvvgygefsekipltptqkknakrrek
qrrnqvehhhhhh

    Sequence, based on observed residues (ATOM records):
    >2yibB (B:)
difnspqnkasiltalmedvlipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmv
eletdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllk
qltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpkt
vgytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylphvtikssagl
pyigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscgllfpkgery
tqvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfspfhggmdrim
tiirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammyylltrgwtn
edgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivva
ewvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgyladgsdlpp
irpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalarkpgaeiayq
ivryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegi
tlsepltnqtlvdintpldsfdpkarpqtprspkktldevttaitsgtykdpksavwrll
dqrtklrvstlrdqalalkpasssvdnwaeateelaqqqqllmkannllkssltetreal
etiqsdkii

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2yibC (C:)
msdifnspqnkasiltalmksttgdvedvlipkrfrpakdpldspqaaaqflkdnkyril
rpraiptmveletdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtf
gapditllkqltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatg
rnpnktpktvgytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylph
vtikssaglpyigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscg
llfpkgerytqvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfsp
fhggmdrimtiirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammy
ylltrgwtnedgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnn
hlmstivvaewvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgy
ladgsdlppirpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalar
kpgaeiayqivryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnms
efggdlegitlsepltnqtlvdintpldsfdpkarpqtprspkktldevttaitsgtykd
pksavwrlldqrtklrvstlrdqalalkpasssvdnwaeateelaqqqqllmkannllks
sltetrealetiqsdkiiagksnpeknpgtaanpvvgygefsekipltptqkknakrrek
qrrnqvehhhhhh

    Sequence, based on observed residues (ATOM records):
    >2yibC (C:)
difnspqnkasiltalmedvlipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmv
eletdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllk
qltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpkt
vgytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylphvtikssagl
pyigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscgllfpkgery
tqvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfspfhggmdrim
tiirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammyylltrgwtn
edgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivva
ewvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgyladgsdlpp
irpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalarkpgaeiayq
ivryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegi
tlsepltnqtlvdintpldsfdpkarpqtprspkktldevttaitsgtykdpksavwrll
dqrtklrvstlrdqalalkpasssvdnwaeateelaqqqqllmkannllkssltetreal
etiqsdkii

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2yibD (D:)
msdifnspqnkasiltalmksttgdvedvlipkrfrpakdpldspqaaaqflkdnkyril
rpraiptmveletdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtf
gapditllkqltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatg
rnpnktpktvgytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylph
vtikssaglpyigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscg
llfpkgerytqvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfsp
fhggmdrimtiirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammy
ylltrgwtnedgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnn
hlmstivvaewvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgy
ladgsdlppirpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalar
kpgaeiayqivryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnms
efggdlegitlsepltnqtlvdintplxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

    Sequence, based on observed residues (ATOM records):
    >2yibD (D:)
difnspqnkasiltalmedvlipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmv
eletdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllk
qltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpkt
vgytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylphvtikssagl
pyigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscgllfpkgery
tqvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfspfhggmdrim
tiirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammyylltrgwtn
edgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivva
ewvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgyladgsdlpp
irpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalarkpgaeiayq
ivryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegi
tlsepltnqtlvdintplxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx